Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05524 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTCTCAAACCAATCTCAGTGCTTCTTCATCAATGGAAGTTTCTCCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACTCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGATCGATGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCTTTCCTTCATCACTTCAAGTGAGAAACAAAAGGTACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTGTCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGCACCAACTGATGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAAATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACGTCAAAATGGGTTGGCGAAGGTGAAAAGCTTGTACGGACACTATTCATGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAAGCCAGTAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGATGCTTGTAAAAGATACTGAAGGATACTCTGGAAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTAAGAGGGCCGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1440 0.4146 MSFLQGIIDSFNSVFSPQSIDQNSSSSQTNLSASSSMEVSPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVLSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLAPTDAVPTKLSNTTKKVLQKNPQRKNEVNKVQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEGEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPNRDLEMLVKDTEGYSGSDLQALCEEAAMMPIRELGPNILTVRGPRYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05524 479 CDD MIT_spastin 53 131 - -
Trre1g05524 479 Gene3D - 208 473 IPR027417 -
Trre1g05524 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 476 IPR027417 -
Trre1g05524 479 SMART smart 53 130 IPR007330 -
Trre1g05524 479 PANTHER AAA DOMAIN-CONTAINING 108 478 - -
Trre1g05524 479 Pfam AAA+ lid domain 404 435 IPR041569 -
Trre1g05524 479 FunFam AAA-type ATPase family protein 46 135 - -
Trre1g05524 479 MobiDBLite consensus disorder prediction 134 190 - -
Trre1g05524 479 ProSitePatterns AAA-protein family signature. 351 370 IPR003960 GO:0005524|GO:0016887
Trre1g05524 479 SMART AAA_5 245 381 IPR003593 GO:0016887
Trre1g05524 479 FunFam Fidgetin like 1 380 457 - -
Trre1g05524 479 CDD RecA-like_spastin 214 377 - -
Trre1g05524 479 Gene3D - 45 135 - -
Trre1g05524 479 FunFam Spastin, putative 208 392 - -
Trre1g05524 479 Pfam Vps4 C terminal oligomerisation domain 446 477 IPR015415 -
Trre1g05524 479 Gene3D - 380 457 - -
Trre1g05524 479 Pfam ATPase family associated with various cellular activities (AAA) 249 379 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05524 Trre-Chr1 60668737 60673624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05524 189 434 Calmodulin-binding Proteins AT3G56690 42.063 3.29e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05524 K13254 - gmx:100780946 770.77