Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05520 ATGAAGGATATTCTGGATGGCGTACGAAAAAAGAAGCTGAAAAAGAAGTCTATTGATATTGAAGGTGATGTTGCTGAAGTTGAGGTTGCTGCCAATTCAAATGAAAAGAGGAAAAATGTAGGGGAGGTAGCACGCGAAGATATTTCCAAAAGAGGTTTCACTACACTTACACTTATAGTTGAGGATTCTGATTCCATGGCCTCTAAAACTGAAAGCGAGAGTCCAACAGATACGCCACCATCACCGCCAAAGAATGTATACAAGGATCCTGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATCTGGCTCAGAACCGATATTTCGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAGTTTATTATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTACCAATAAGGAATTGGCGCATAGACAGCAGTTCTACTTCTGGAAGAACTATAGGAACAATCGGCTGAAACATATTTTACCAAAACCACTTCCAGAACCTACTGCTGCACTTCCTGCTTCAACTCAACCCCAGCCCCCCGTGCCTGCACTGCCACCGCCACCACCACCACCTGCTGCTACAAATGTTGCTGTGACAACATCTTCTACTCAAGCTCCTTCTCCAATGCCATACGGCTCTGGTCTTGCAAAAAATGACCCGAGGAATCCTACAGTTGATAGAAGGAAAAGAAAATGA 804 0.4291 MKDILDGVRKKKLKKKSIDIEGDVAEVEVAANSNEKRKNVGEVAREDISKRGFTTLTLIVEDSDSMASKTESESPTDTPPSPPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPKPLPEPTAALPASTQPQPPVPALPPPPPPPAATNVAVTTSSTQAPSPMPYGSGLAKNDPRNPTVDRRKRK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05520 267 MobiDBLite consensus disorder prediction 198 267 - -
Trre1g05520 267 MobiDBLite consensus disorder prediction 201 230 - -
Trre1g05520 267 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 83 184 IPR038089 -
Trre1g05520 267 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 68 267 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trre1g05520 267 MobiDBLite consensus disorder prediction 231 245 - -
Trre1g05520 267 FunFam Mediator of RNA polymerase II transcription subunit 31 83 184 - -
Trre1g05520 267 Pfam SOH1 95 187 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trre1g05520 267 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05520 Trre-Chr1 60627042 60631221 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Trre1g05520 Med31 3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05520 K15153 - gmx:100818057 321.242