Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05519 ATGAAGGATATTCTGGATGGCGTACGAAAAAAGAAGCTGAAAAAGAAGTCTATTGATATTGAAGGTGATGTTGCTGAAGTTGAGGTTGCTGCCAATTCAAATGAAAAGAGGAAAAATGTAGGGGAGGTAGCACGCGAAGATATTTCCAAAAGAGGTTTCACTACACTTACACTTATAGTTGAGGATTCTGATTCCATGGCCTCTAAAACTGAAAGCGAGAGTCCAACAGATACGCCACCATCACCGCCCAATAAAACAAAAGTCTATCTTAGAAGGGGAGCAAAGGGGAAAAGTGAGCAACGGGGTGGGTCTGCTATCTTAACCCAACCCGAGGAGATTAGAGGAGGAATAACAGAAGGGACAAATGGCGATGGAAGAGTGTTAGAGATAGTGCCAAAGAATGTATACAAGGATCCTGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATCTGGCTCAGAACCGATATTTCGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAGTTTATTATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTACCAATAAGGAATTGGCGCATAGACAGCAGTTCTACTTCTGGAAGAACTATAGGAACAATCGGCTGAAACATATTTTACCAAAACCACTTCCAGAACCTACTGCTGCACTTCCTGCTTCAACTCAACCCCAGCCCCCCGTGCCTGCACTGCCACCGCCACCACCACCACCTGCTGCTACAAATGTTGCTGTGACAACATCTTCTACTCAAGCTCCTTCTCCAATGCCATACGGCTCTGGTCTTGCAAAAAATGACCCGAGGAATCCTACAGTTGATAGAAGGAAAAGAAAATGA 951 0.4343 MKDILDGVRKKKLKKKSIDIEGDVAEVEVAANSNEKRKNVGEVAREDISKRGFTTLTLIVEDSDSMASKTESESPTDTPPSPPNKTKVYLRRGAKGKSEQRGGSAILTQPEEIRGGITEGTNGDGRVLEIVPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPKPLPEPTAALPASTQPQPPVPALPPPPPPPAATNVAVTTSSTQAPSPMPYGSGLAKNDPRNPTVDRRKRK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05519 316 MobiDBLite consensus disorder prediction 61 119 - -
Trre1g05519 316 MobiDBLite consensus disorder prediction 61 75 - -
Trre1g05519 316 FunFam Mediator of RNA polymerase II transcription subunit 31 132 233 - -
Trre1g05519 316 MobiDBLite consensus disorder prediction 280 294 - -
Trre1g05519 316 Pfam SOH1 144 236 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trre1g05519 316 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 131 233 IPR038089 -
Trre1g05519 316 MobiDBLite consensus disorder prediction 247 316 - -
Trre1g05519 316 MobiDBLite consensus disorder prediction 250 279 - -
Trre1g05519 316 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 118 316 IPR008831 GO:0003712|GO:0006355|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05519 Trre-Chr1 60627042 60631221 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Trre1g05519 Med31 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05519 K15153 - gmx:100818057 306.605