Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05518 ATGGAGCTTCACAACCTTCTTTCTAATATCACCTTGGTTTCCTGCTTTCTCTTGTTGCTACTCAAAATAGTTAAAACATGGAGTTGTAACAATTCTACTGTCAATTTACCACCAGGACCATGGACATTACCATTCATAGGAAATATACATCAAATTATCAGCAGCAGCTCCCTGCCTCATCACTGCTTCAAAAATTTGGCAGACAAATATGGACCCTTAATGCACCTAAAACTAGGACAGGTATCATGCATAATAGTTAGTTCAGCAGAAATGGCTAAAGAAATTTTGAAAACACAAGACCACAACTTTTGTAATAGACCAAACCTTCTTTTGGCTACAATACTTACTTACAATGCTACAGATATCTCCTTCTCTGCATATGGAGAACATTGGAGGCAACTGCGAAAAATATGTGTTGTAGAGCTATTAAATGCAAAGCGTGTTCAATCATTTAGATCCATAAGAGAAGAAGAGGTTTTAACACTAGTTAAATCAATATCTGCTAGTGAAGCTTCAGTTGTTAATCTCAGTCATATGATTTTCTCAATGACATGTGGGATAACAACGCGAGCAGCTTTTGGGAAAAAGAGTAGACACATACATGAGTTTAAATCCGCAATGGAGCAATCAATAAGACTATTAGGAGGATTTTGTATTGCAGATTTGTATCCTTCTATTAAAATAATACTTCAAAGGTTGAGTTCGGCGAAGACTAAAATGGAAAAACTTCAAAGAGAGTCTGATATGATATTGCAAGATATCATTAATGATCACAGAAGTAGTCACAGAGAAGAAAGCAAGGATGAAGATTTAGTTGATGTTCTTTTGAAGATTCAACGAGAAAATGATGACTCAGAACACCCCTTGACTGATAACAGTATTAAAGCAGTCATTCAGGACGTATTCACTGCTGGTAGCGAAGCATCATCGGGGATTGTTCTATGGGCGATGTCTGAGATGGTAAAGAATCCAAAGGTAATGGAAATAGCACAAGCTGAGGTAAGAAGTGTATTCGATAAGAAGGGATATGTGGATGAGACAGAGTTGCACCAATTGATATACTTAAAGCTTGTCATCAAAGAAACATTGAGGATGCATCCTTCTATACCATTGTTGATTCCAAGAGAAAGTATGGAGCGATGTCAAATCAATGGTTATGATATCCCAGCTAAGACAAGGGTCGCTGTCAATGTTTCGGCAATTGGAAGAGATCCAAGGTATTGGGTTGAAGCTGAGAGTTTTAAACCCGAGAGGTTTATTGATAACCCAATCGATTTCAAAGGTACGGAATTTCAGTACTTACCATTTGGTGCTGGGAGGAGGATGTGTCCAGGTATAGTGTTTGCATTACCTAATGTCGAGTTGCCTCTTGCTGAGTTACTTTACCACTTTGATTGGAAGCTTCCAAATGAAATGATGATTGAAGAATTGGATATGACCGAGTCATTTGGGATTACAGCTGGAAGAAAAAATGACCTATGCTTGATTCCTAATACTCGTCGCCGTGTTTGA 1512 0.3796 MELHNLLSNITLVSCFLLLLLKIVKTWSCNNSTVNLPPGPWTLPFIGNIHQIISSSSLPHHCFKNLADKYGPLMHLKLGQVSCIIVSSAEMAKEILKTQDHNFCNRPNLLLATILTYNATDISFSAYGEHWRQLRKICVVELLNAKRVQSFRSIREEEVLTLVKSISASEASVVNLSHMIFSMTCGITTRAAFGKKSRHIHEFKSAMEQSIRLLGGFCIADLYPSIKIILQRLSSAKTKMEKLQRESDMILQDIINDHRSSHREESKDEDLVDVLLKIQRENDDSEHPLTDNSIKAVIQDVFTAGSEASSGIVLWAMSEMVKNPKVMEIAQAEVRSVFDKKGYVDETELHQLIYLKLVIKETLRMHPSIPLLIPRESMERCQINGYDIPAKTRVAVNVSAIGRDPRYWVEAESFKPERFIDNPIDFKGTEFQYLPFGAGRRMCPGIVFALPNVELPLAELLYHFDWKLPNEMMIEELDMTESFGITAGRKNDLCLIPNTRRRV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05518 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Trre1g05518 503 CDD CYP71-like 69 493 - -
Trre1g05518 503 FunFam Cytochrome P450 71D8 29 497 - -
Trre1g05518 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PANTHER CYTOCHROME P450 71B11-RELATED 20 498 - -
Trre1g05518 503 SUPERFAMILY Cytochrome P450 37 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 Coils Coil 226 253 - -
Trre1g05518 503 Gene3D Cytochrome P450 29 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 Pfam Cytochrome P450 37 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05518 503 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05518 Trre-Chr1 60622808 60624415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05518 10 497 Cytochrome P450 AT1G13110 39.921 4.99e-138 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05518 - - mtr:11442302 744.191