Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05516 ATGGCAATGAAGTCTTCCTTCAACAACATAGCTGACGTTCTGCTTGACTGGGATGATGTGCACAATGATGACTTCTGCTCATGGCGTGGTGTCTTATGTGATAATGTCAGTGTTGCTCTTACTGTGGTATCTCTGAATTTATCAAGCTTGAATCTTGGTGGTGAGATATCACCAGCTGTTGGTGATTTAAGAAACTTGCAGTCCATCGACTTGCAAGGGAACAAACTAACTGGTCAAATACCGGATGAAATTGGAAACTGTGGTGCACTTGTTCATCTGGATTTATCTGATAATCAGCTTTATGGTGATATACCTTTCTCAATATCAAAGCTGAAGCAACTTGAGTTTTTGAATTTGAAAAACAATCAGTTAACTGGTCCTATTCCTTCTACTTTATCCCAAATTCCAAACCTCAAGACTCTTGATCTGGCTCGAAATAAGCTCATAGGAGAGATACCAAGGCTACTCTATTGGAATGAAGTATTGCAATACCTTGGTTTGCGAGGGAACATGTTGACAGGAATTTTGTCTCCCGATATTTGCCAGTTATCTGGTTTGTGGTACTTTGATGTCAGAGACAATAATTTGACTGGTACTATACCTGAAAGCATCGGCAACTGTACAAGTTTCGAAATCTTCGACATTTCATATAATCAGATTACTGGGGAGATTCCTTATAACATTGGATTTCTTCAAGTAGCTACTTTGTCACTTCAAGGAAATAGATTAACTGGCAAGATACCAGAAGTGATTGGTTTGATGCAAGCTCTAGCAATTTTGGATTTGAGTGAGAATCAGTTAGTGGGACCAATTCCTCCAATACTAGGAAATCTGTCTTTCACCGGCAAGCTGTACCTTCATGGAAACAAGCTCACTGGTTCAATACCTCCCGAGCTTGGCAATATGTCTAAACTGAGCTACCTGCAATTGAATGATAATCAACTGGTGGGGCAAATTCCTAATGAGTTCTGCAAGCTTGAACATCTGTTTGAATTGAATCTTGCCAATAATCGTCTTGATGGATCTATTCCGCATAACATAAGCTCGTGCACAGCCTTAAATCAGTTTAATGTGCATGGCAATCAATTAAGCGGTTCTATTCCGATGAGCTTTCGTAACCTTGAGAGTTTGACTTACTTGAATCTCTCTGCGAACAACTTCAAGGGGAATATACCGGTTGAGTTGGGCCATATCATTAATCTAGATACACTGGACCTATCCAGCAATAATTTTTCAGGCCATGTCCCAGCTTCAGTTGGTTATCTCGAGCATCTTTTGACACTGAACTTGAGTCATAACCATCTCGACGGTCCCTTGTCTGCTGAATTTGGAAATCTCAGAAGCATACAGACTATTGATATGTCCTTCAACAACCTGTCGGGCAACATTCCTCCAGAAATTGGACAGCTGCAGAATCTTGCATCTTTGATTTTGAACAACAATGACCTGCATGGGAAGATTCCGGAACAGCTCACCAATTGTTTCAGTCTTTCTTCCTTGAACTTTTCTTATAACAACTTCACTGGAATAGTTCCATCTACGAAGAACTTCACACGGTTCTCAGCTGACAGCTTCATTGGAAATCCCTTATTATGTGGAAATTGGTTAGGATCTATATGTCGTCCTTATGTTCCAAAGTCAAGAGAGATTTTCTCTAAAGTTGCAGTTGTATGTCTCACTCTTGGTATCATCGTGTTATTGGCTATGGTAATTATTGCTATCTATAGATCCATCCAATCGAAGCAGCTGATGAAAGGATCTAGCAAGACCGTGCAAGTGCCTCCTAAACTTGTAATTCTTCATATGGATTTGGCATTACACACTTTGGATGATATAATGAGAAACACCGAGAATCTCAGTGAGAAATTTATCGTAGGGTATGGTGCCTCTAGTACTGTATACAAGTGTGTGTTGAAAAACTCCCGACCGATTGCAGTCAAGCGATTGTACAATCAGCATCCACACAATGTAAAAGATTTTGAAACAGAACTTGAAACTATTGGCAGCATTAGGCATAGAAATCTTGTCACCTTGCACGGCTATGCCCTTACTCCTTATGGGAATCTTCTTTTCTATGAATACATGGCAAATGGTTCTCTGTGGGATCTTCTACATGGTCCACTAAAGGTAAAACTTGATTGGGAAACACGTATGAGGATCGCTGTTGGAGCAGCTGAAGGACTTGCGTATCTTCACCATGATTGCAACCCTCGAATTGTTCACAGGGACATCAAGTCTTCGAATATTTTGCTGGACGAGAACTTTGAAGCTCACCTCTCTGATTTTGGCACTGCTAAATGCATCCCTGCCACAAAAACTCACGCCTCAACTTATGTTCTTGGAACCATTGGCTATATTGATCCTGAATATGCACGAACATCTAGGCTGAATGAAAAATCCGATGTATATAGCTTTGGCATTGTGCTGCTAGAGCTACTTACTGGGAAGAAGGCTGTGGACAATGACTCCAATTTGCATCAATTGATACTTTCGAAGGCGGATAATAACACTGTAATGGAGGCTGTGGATCCAGAGGTATCCATTACTTGCATCGATTTGGCTCATGTCAAGAAAACCTTTCAACTTGCTTTGCTTTGCACCAGAAGGAACCCTTCTGAGAGACCTACCATGCATGAAGTAGCTAGGGTGCTTATTTCACAACTTCCCGCACCTCCAAGTAAAGTTAAAGTTGCCGCTGCTGCTTCTGCTGCTAAGAGTTTTGACTATGCGCCTTTTGTGGTTGAGAAGGGACAGCAACACCGAAAATTGGATGGACTACAATCTCAGCAGGATAACAGTTTGCCCAATGCTGAATGGTTTGTTCGTTTCGGGGATGTTATATCCAAGAGCTCCCACTGA 2859 0.4124 MAMKSSFNNIADVLLDWDDVHNDDFCSWRGVLCDNVSVALTVVSLNLSSLNLGGEISPAVGDLRNLQSIDLQGNKLTGQIPDEIGNCGALVHLDLSDNQLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLSQIPNLKTLDLARNKLIGEIPRLLYWNEVLQYLGLRGNMLTGILSPDICQLSGLWYFDVRDNNLTGTIPESIGNCTSFEIFDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENQLVGPIPPILGNLSFTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGQIPNEFCKLEHLFELNLANNRLDGSIPHNISSCTALNQFNVHGNQLSGSIPMSFRNLESLTYLNLSANNFKGNIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLTLNLSHNHLDGPLSAEFGNLRSIQTIDMSFNNLSGNIPPEIGQLQNLASLILNNNDLHGKIPEQLTNCFSLSSLNFSYNNFTGIVPSTKNFTRFSADSFIGNPLLCGNWLGSICRPYVPKSREIFSKVAVVCLTLGIIVLLAMVIIAIYRSIQSKQLMKGSSKTVQVPPKLVILHMDLALHTLDDIMRNTENLSEKFIVGYGASSTVYKCVLKNSRPIAVKRLYNQHPHNVKDFETELETIGSIRHRNLVTLHGYALTPYGNLLFYEYMANGSLWDLLHGPLKVKLDWETRMRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCIPATKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSITCIDLAHVKKTFQLALLCTRRNPSERPTMHEVARVLISQLPAPPSKVKVAAAASAAKSFDYAPFVVEKGQQHRKLDGLQSQQDNSLPNAEWFVRFGDVISKSSH 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05516 952 ProSiteProfiles Protein kinase domain profile. 619 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05516 952 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 695 894 - -
Trre1g05516 952 SMART LRR_typ_2 135 159 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 302 325 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 254 278 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 422 445 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 63 87 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 111 134 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 326 350 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 374 398 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 470 494 IPR003591 -
Trre1g05516 952 SMART LRR_typ_2 183 207 IPR003591 -
Trre1g05516 952 SUPERFAMILY RNI-like 177 513 - -
Trre1g05516 952 SMART serkin_6 619 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05516 952 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 270 543 - -
Trre1g05516 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Trre1g05516 952 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 1 159 - -
Trre1g05516 952 Gene3D Ribonuclease Inhibitor 160 232 IPR032675 -
Trre1g05516 952 Pfam Leucine Rich repeats (2 copies) 112 153 IPR025875 -
Trre1g05516 952 ProSiteProfiles Leucine-rich repeat profile. 137 159 IPR001611 GO:0005515
Trre1g05516 952 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 135 885 - -
Trre1g05516 952 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 590 694 - -
Trre1g05516 952 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Trre1g05516 952 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 160 269 - -
Trre1g05516 952 SUPERFAMILY L domain-like 23 231 - -
Trre1g05516 952 Pfam Leucine Rich Repeat 65 87 IPR001611 GO:0005515
Trre1g05516 952 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Trre1g05516 952 Gene3D Ribonuclease Inhibitor 417 542 IPR032675 -
Trre1g05516 952 Gene3D Ribonuclease Inhibitor 320 416 IPR032675 -
Trre1g05516 952 Gene3D Ribonuclease Inhibitor 1 159 IPR032675 -
Trre1g05516 952 Gene3D Ribonuclease Inhibitor 233 319 IPR032675 -
Trre1g05516 952 Gene3D Transferase(Phosphotransferase) domain 1 695 894 - -
Trre1g05516 952 Pfam Leucine rich repeat 400 459 IPR001611 GO:0005515
Trre1g05516 952 Pfam Leucine rich repeat 283 339 IPR001611 GO:0005515
Trre1g05516 952 Gene3D Phosphorylase Kinase; domain 1 580 694 - -
Trre1g05516 952 Pfam Protein kinase domain 624 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05516 952 SUPERFAMILY Protein kinase-like (PK-like) 602 884 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05516 Trre-Chr1 60595115 60600760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05516 65 951 Receptor kinase-like Gene Family AT5G07180 75.788 0.0 1357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Trre1g05516 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05516 K20718 - gmx:100811653 1619.36