Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05508 ATGACGACAACCAATGAGGATGATAATGAGAATAGTTTAGAGCTTGTGGTTGAGCTGAGTAAAGAAAAGAAAACTAAGAAGAAAAAAGCTAAGTCGGAAGAAAGTTTTGTGATGGAAAAGAAAGTGGAGGATCCTAATGCGGTTTCTAAATTTAAGATATCTGAACCGTTGAGGGAAAAGTTGAAGGAAAAGGGAATTGAATCATTGTTTCCTATTCAGGCTATGACTTTTGATATCATTCTTCATGGTTCTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACACTTGCCTTTGTATTGCCCATATTAGAATCTGTAACGAATTGTCCGGGAAAAGCATCAAGAAAGAGCGGCGATGGGAGGGCTCCAAGTGTTCTTGTGCTTTTACCTACACGAGAATTGGCATGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGTGCATTGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTCCATATCAACCTCAAAAAATGAAGCTTGAGAGAGGCGTGGATATTGTTATTGGCACACCGGGCCGCATAAAGGATCATATAGAGCGGGGAAGTATTGACCTAAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTGAAAAATGTAGGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGGATATTGCTAAAAGATTTCTTAAGCCAGATAAGGAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACTAGCGTAAGGCATATTATTCTTCCCTGTACGGGTTCTGCTAGGTCACAACTTATTCCAGATATTATTCGATGTTACAGCAGTGGAGGTCGAACAATTATATTCACTGAGACAAAGGAATCAGCATCTCAGCTTGCAGAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAACGTGGCAGCGCGGGGTCTTGATATAAATGACGTTCAGTTAATTATTCAGTGTGAGCCTCCAAAGGATGTTGAAGCCTATATCCATCGTTCCGGACGCACAGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATCTAAAATAGAGAAAGAGTCAGGCGTTAAATTTGAACACGTATCTGCCCCTCAGGCTAATGATATTGCCAAAGCAGTTGGTCGAGAAGCTGCCGAAATGATTAACCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCGGCTGAGGAACTTCTAAAAAACTCTGGTTTATCAGAAGTTGATTTACTTGCAAAGGCTCTAGCCAAGGCTGTTGGTTATACCGAGATCAAGAAAAGATCTCTTCTCACTTCTATGGAGAACTATGTTACATTACTTCTCGAGAACGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCCGTGAAAGGTCTTACTATCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAACATTTAGATGCATATCTTGCTGGTAAAGAAAATTCCTCAGATGTAAGTTTAGAGGTGCTAAAAGCTTTGCCACGTCTGCAACAGAGAGATCAATCAAGAGGCGGAAGATTTGGTGACGGTGGTGGCCGCGGTGGAAGAAGTGGTGGTGGTGGAAGGAACGGTAGATTTTCAAGCGATAGGTTTTCGAACGGCGGTGGTAGAGGTCGTGGCAACTGGGGTGGAAAAAAATGGTGA 1878 0.4249 MTTTNEDDNENSLELVVELSKEKKTKKKKAKSEESFVMEKKVEDPNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDIILHGSDLVGRARTGQGKTLAFVLPILESVTNCPGKASRKSGDGRAPSVLVLLPTRELACQVNADFEVYGGALGLTSCCLYGGAPYQPQKMKLERGVDIVIGTPGRIKDHIERGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGKVQTLLFSATLPDWVKDIAKRFLKPDKETADLVGNTKMKASTSVRHIILPCTGSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAELLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPKDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQANDIAKAVGREAAEMINQVSDSVIPAFKSAAEELLKNSGLSEVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLENGRPIFTPTFAYKILRRFLPEEKVEAVKGLTITADGSGVVFDVPAEHLDAYLAGKENSSDVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGRSGGGGRNGRFSSDRFSNGGGRGRGNWGGKKW 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05508 625 MobiDBLite consensus disorder prediction 578 625 - -
Trre1g05508 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 403 IPR027417 -
Trre1g05508 625 CDD GUCT_RH7_like 487 572 - -
Trre1g05508 625 Gene3D - 283 498 IPR027417 -
Trre1g05508 625 SMART ultradead3 65 277 IPR014001 -
Trre1g05508 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 259 IPR014001 -
Trre1g05508 625 SUPERFAMILY RNA-binding domain, RBD 484 567 IPR035979 GO:0003676
Trre1g05508 625 Pfam GUCT (NUC152) domain 480 575 IPR012562 GO:0003723|GO:0004386|GO:0005524
Trre1g05508 625 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Trre1g05508 625 SMART helicmild6 314 391 IPR001650 -
Trre1g05508 625 Gene3D - 499 569 - -
Trre1g05508 625 Pfam DEAD/DEAH box helicase 70 247 IPR011545 GO:0003676|GO:0005524
Trre1g05508 625 Gene3D - 10 259 IPR027417 -
Trre1g05508 625 FunFam DEAD-box ATP-dependent RNA helicase 7 497 569 - -
Trre1g05508 625 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 460 - -
Trre1g05508 625 CDD DEADc 57 254 - -
Trre1g05508 625 Pfam Helicase conserved C-terminal domain 293 391 IPR001650 -
Trre1g05508 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 430 IPR001650 -
Trre1g05508 625 CDD SF2_C_DEAD 274 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05508 Trre-Chr1 60517037 60520887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05508 30 397 Eukaryotic Initiation Factors Gene Family AT3G19760 29.412 8.42e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05508 K16911 - gmx:100820207 896.73