Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05507 ATGCCGCCATGTCTGCTCAATCTCACTTCACCCATAAACATAACAACAAAAAAACCAAAAAAAAACAACACTCAATCACAAACTGAACCAGAAGATTCAACAATCACCGACGACAATAACAACAAGAAAAACATCAACAATCTCAATCCCCCCGATCCCGACAACAATGGGGTTTCGGGGAAGACAAAGACAAAGACAAAGAAGAACAAGAACAAAAAGAAGCGTAAGGCTTCAGAGTTAGCGACAATGACGACAACCAATGAGGATGATAATGAGAATAGTTTAGAGCTTGTGGTTGAGCTGAGTAAAGAAAAGAAAACTAAGAAGAAAAAAGCTAAGTCGGAAGAAAGTTTTGTGATGGAAAAGAAAGTGGAGGATCCTAATGCGGTTTCTAAATTTAAGATATCTGAACCGTTGAGGGAAAAGTTGAAGGAAAAGGGAATTGAATCATTGTTTCCTATTCAGGCTATGACTTTTGATATCATTCTTCATGGTTCTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACACTTGCCTTTGTATTGCCCATATTAGAATCTGTAACGAATTGTCCGGGAAAAGCATCAAGAAAGAGCGGCGATGGGAGGGCTCCAAGTGTTCTTGTGCTTTTACCTACACGAGAATTGGCATGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGTGCATTGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTCCATATCAACCTCAAAAAATGAAGCTTGAGAGAGGCGTGGATATTGTTATTGGCACACCGGGCCGCATAAAGGATCATATAGAGCGGGGAAGTATTGACCTAAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTGAAAAATGTAGGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGGATATTGCTAAAAGATTTCTTAAGCCAGATAAGGAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACTAGCGTAAGGCATATTATTCTTCCCTGTACGGGTTCTGCTAGGTCACAACTTATTCCAGATATTATTCGATGTTACAGCAGTGGAGGTCGAACAATTATATTCACTGAGACAAAGGAATCAGCATCTCAGCTTGCAGAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAACGTGGCAGCGCGGGGTCTTGATATAAATGACGTTCAGTTAATTATTCAGTGTGAGCCTCCAAAGGATGTTGAAGCCTATATCCATCGTTCCGGACGCACAGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATCTAAAATAGAGAAAGAGTCAGGCGTTAAATTTGAACACGTATCTGCCCCTCAGGCTAATGATATTGCCAAAGCAGTTGGTCGAGAAGCTGCCGAAATGATTAACCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCGGCTGAGGAACTTCTAAAAAACTCTGGTTTATCAGAAGTTGATTTACTTGCAAAGGCTCTAGCCAAGGCTGTTGGTTATACCGAGATCAAGAAAAGATCTCTTCTCACTTCTATGGAGAACTATGTTACATTACTTCTCGAGAACGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCCGTGAAAGGTCTTACTATCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAACATTTAGATGCATATCTTGCTGGTAAAGAAAATTCCTCAGATGTAAGTTTAGAGGTGCTAAAAGCTTTGCCACGTCTGCAACAGAGAGATCAATCAAGAGGCGGAAGATTTGGTGACGGTGGTGGCCGCGGTGGAAGAAGTGGTGGTGGTGGAAGGAACGGTAGATTTTCAAGCGATAGGTTTTCGAACGGCGGTGGTAGAGGTCGTGGCAACTGGGGTGGAAAAAAATGGTGA 2124 0.4223 MPPCLLNLTSPINITTKKPKKNNTQSQTEPEDSTITDDNNNKKNINNLNPPDPDNNGVSGKTKTKTKKNKNKKKRKASELATMTTTNEDDNENSLELVVELSKEKKTKKKKAKSEESFVMEKKVEDPNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDIILHGSDLVGRARTGQGKTLAFVLPILESVTNCPGKASRKSGDGRAPSVLVLLPTRELACQVNADFEVYGGALGLTSCCLYGGAPYQPQKMKLERGVDIVIGTPGRIKDHIERGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGKVQTLLFSATLPDWVKDIAKRFLKPDKETADLVGNTKMKASTSVRHIILPCTGSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAELLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPKDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQANDIAKAVGREAAEMINQVSDSVIPAFKSAAEELLKNSGLSEVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLENGRPIFTPTFAYKILRRFLPEEKVEAVKGLTITADGSGVVFDVPAEHLDAYLAGKENSSDVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGRSGGGGRNGRFSSDRFSNGGGRGRGNWGGKKW 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05507 707 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Trre1g05507 707 SMART helicmild6 396 473 IPR001650 -
Trre1g05507 707 CDD DEADc 139 336 - -
Trre1g05507 707 FunFam DEAD-box ATP-dependent RNA helicase 7 579 651 - -
Trre1g05507 707 CDD SF2_C_DEAD 356 482 - -
Trre1g05507 707 MobiDBLite consensus disorder prediction 8 62 - -
Trre1g05507 707 SUPERFAMILY RNA-binding domain, RBD 566 649 IPR035979 GO:0003676
Trre1g05507 707 CDD GUCT_RH7_like 569 654 - -
Trre1g05507 707 MobiDBLite consensus disorder prediction 660 707 - -
Trre1g05507 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 485 IPR027417 -
Trre1g05507 707 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 341 IPR014001 -
Trre1g05507 707 Gene3D - 581 651 - -
Trre1g05507 707 Pfam DEAD/DEAH box helicase 152 329 IPR011545 GO:0003676|GO:0005524
Trre1g05507 707 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Trre1g05507 707 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Trre1g05507 707 Gene3D - 365 580 IPR027417 -
Trre1g05507 707 SMART ultradead3 147 359 IPR014001 -
Trre1g05507 707 MobiDBLite consensus disorder prediction 1 89 - -
Trre1g05507 707 Gene3D - 54 340 IPR027417 -
Trre1g05507 707 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 71 542 - -
Trre1g05507 707 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05507 Trre-Chr1 60517037 60521133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05507 112 479 Eukaryotic Initiation Factors Gene Family AT3G19760 29.412 2.28e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05507 K16911 - gmx:100820207 902.508