Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05506 ATGAAATTCATAGATTTTCTCTTTGCAGAGAAACCTCTATTTCCAACATTAATACTTATTGTTATAGCTGCTTTTGTTATCAAAATTCATGGCAATAGATTATTTGACAAGAAAAGAAAATATCACCCTGTTGCTGGCACAGTCTTGCATCAACTGTTAAACTTTCATAGGCTGCTTGAGTACATGACTGACCTTACAAATAAGAGAAAAACTTACAGGCTGCTTAGCTTCACTAGAAGTCAAGTGTACACTGCAAACCCTGCTAATATTGAGTATATGCTAGTGACAAACTTCTCAAACTATGGCAAGGGTTGGTATCACCACAGTGTCTTGGAAGATCTACTGGGAGATGGTATATTCACAGTGGACGGAGAGCAGTGGCGACATCAGAGAAAATCAGCAAGCTATCAATTCTCAACTAAGTTATTGAGAGAATTCAGCAGCTCAGTGTTTAAATCCAGTGCAGTAAAACTTGCAGGGATAGTGTCTGAAGCTGCGATCTCAAACAATATTATTGAACTGCAGGACCTGTTCATGAAATCAACTCTAGATTCTGTATTCAAGGTTATTCTTGGTGTAGAATTGGACACAATGTGTGGAACCTATAGAGAAGGTACACAATTTTCCATTGCTTTTGATGAAGCAAGTGCAGCTATCATGTTTAGGTATTTTAACTTTCTCTGGAAAGTTCAGCGGTTCTTCAACATCGGATCGGAAGCGGTACTAAAAAAAAGCCTAAGAGTGATCGATGACTACGTATACAAAGTAATCACAAGCAAGATCGAGCAATCTCAAAAGCCACAAGATAACTCTCTTGGGTTGAAAGGAGACATTTTGTCAAGGTTTATAGAATTGAATGAGACAGATTCAAAGTACCTTAAAGACATTATTTTGAATTTTGTCATTGCAGCGAAAGATACATCAGCAATCACTCTTTCCTGGTTTATTTACCAACTCTGCAAGCATCCTCATGTGCAGGAAAAGATTGCACAAGAGATTAGGGAGATAACAAAATTAGAAGATGGTTTAACCATTGATGAACTTGCAGCTAAAGTAACTGAAGAAAGCATGGAAAAGATGCAGTATCTGCATGCAGCTTTGACTGAAACTATCAGGCTCCATCCAGCAATTCCAGTGGAAGGCAAGTATTGTTTTTCGGATGATACGATGCCAGATGGATATAGTGTGAGGAAAGGTGATCTTGTTTCATTCCAACCATTTGTCATGGGAAGGATGAAATTCTTGTGGGGAGAAGATGCTGAGCAATTTAGGCCAGAGAGATGGCTTGATGAAAATGGAAATTTTAAGAAAGAAAGCTCTTTTAAGTTCACAGCCTTCCAGGCTGGTCCAAGAATTTGCCTCGGCAAAGACTTTGCATACAGACAAATGAAGATATTTTCTGCAGTTCTGTTAGGTAGCCATGGCTTCAAACTAGCAGACCAAAATAAACTGGTGAAACACAGAATCATGCTCAGTCTACAAATTGATGGTGGCCTGCATGTCTATGCTTTTCAGAGAAATAAATAA 1527 0.3851 MKFIDFLFAEKPLFPTLILIVIAAFVIKIHGNRLFDKKRKYHPVAGTVLHQLLNFHRLLEYMTDLTNKRKTYRLLSFTRSQVYTANPANIEYMLVTNFSNYGKGWYHHSVLEDLLGDGIFTVDGEQWRHQRKSASYQFSTKLLREFSSSVFKSSAVKLAGIVSEAAISNNIIELQDLFMKSTLDSVFKVILGVELDTMCGTYREGTQFSIAFDEASAAIMFRYFNFLWKVQRFFNIGSEAVLKKSLRVIDDYVYKVITSKIEQSQKPQDNSLGLKGDILSRFIELNETDSKYLKDIILNFVIAAKDTSAITLSWFIYQLCKHPHVQEKIAQEIREITKLEDGLTIDELAAKVTEESMEKMQYLHAALTETIRLHPAIPVEGKYCFSDDTMPDGYSVRKGDLVSFQPFVMGRMKFLWGEDAEQFRPERWLDENGNFKKESSFKFTAFQAGPRICLGKDFAYRQMKIFSAVLLGSHGFKLADQNKLVKHRIMLSLQIDGGLHVYAFQRNK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05506 508 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PANTHER CYTOCHROME P450 27 500 - -
Trre1g05506 508 Pfam Cytochrome P450 42 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 SUPERFAMILY Cytochrome P450 40 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS E-class P450 group IV signature 294 320 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS E-class P450 group IV signature 360 376 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS E-class P450 group IV signature 437 453 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS E-class P450 group IV signature 394 408 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 PRINTS E-class P450 group IV signature 453 471 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 Gene3D Cytochrome P450 39 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05506 508 CDD CYP86A 70 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05506 Trre-Chr1 60509568 60516132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05506 17 507 Cytochrome P450 AT2G45510 48.893 1.39e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05506 - - pvu:PHAVU_007G063800g 786.949