Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05502 ATGGATCACTCAGCAAAACCAGATATCTTTTCCACTCACCTAGAATGGTATTCATCTAAAGTAAAATCAGTACTGTCTGAATCAGTAGAATCTGATAAAGACAACAATGAAGAAGAAAGAATCATTTACAGTTACAACACTGCTTTTCATGGAATGGCTGCTAAGTTAAGCCAAGAAGAAGCAAAAAAGCTAGAATCTGAAGCTGGTGTTGTAGCCATCTTTCCTGAAACTAAGTATGAACTACATACAACAAGAAGTCCATATTTTCTTGGTCTTGAACCATTCCAAAGTAGCAACAATAGTTTATCAGAAAAGCTGGTTAACCATGATGTTATAGTTGGTGTGTTAGACACTGGTGTTTGGCCTGAGAGTGAGAGTTTCAATGATGCAGGAATGAAACCAGTACCTTCTCACTGGAAAGGTGCATGTGAAACTGGTAGAGGATTCAGAAATAATCACTGTAATAAGAAGATTGTAGGTGCAAGAATATTCTATCATGGATATGAAGCAGCAACTGGTAAGATTGATGAGCAAGCTGATTATAAATCGCCAAGAGATCAAGATGGTCATGGAACTCACACTGCAGCTACTGTTGCCGGATCTCCGGTTCGTGGTGCTAATCTTCTTGGTTATGCTTATGGAACCGCAAGAGGAATGGCACCAGGTGCAAGAATTGCAGCTTACAAAGTGTGTTGGACTGGTGGATGTTTCAGCTCAGATATTCTATCAGCTGTTGATACAGCTGTAGCTGATGGAGTAAATGTTTTATCAATCTCTTTAGGTGGCGGAGTTTCATCTTACAACCATGACAGTTTAGCTGTAGCTGCATTTGGAGCCATGGAAAAGGGTGTTTTTGTTTCATGCTCAGCTGGAAATTCAGGACCTGACCCTGTCAGCCTAACAAATGTGTCACCATGGATCACCACAGTTGGAGCTAGCACAATGGATAGAGATTTTCCTGCAGATGTTAGCCTTGGAAATGGAAGAAAAATAACAGGAACATCACTCTATAAAGGAAAAACCATGCTCTCAGTTAGAAAACAATACCCTTTGGTATACATGGGAGGTAACTCAAGTAGTCCTGATCCAAGATCTTTGTGCTTGGAAGGTACTTTAGATCGTCGAATCGTTGCCGGAAAGATTGTGATTTGTGATAGAGGAATTAGTCCTAGAGTGCAAAAGGGTCAGGTAGTGAAAAATGCAGGAGGAGTAGGAATGATACTCACAAACACCGCCGCAAATGGTGAAGAACTTGTAGCAGATTGTCACCTACTTCCAGCAGTAGCAATAGGAGAAAAAGAAGGCAAAGAAATAAAACAATATGTGTTAACAAATAAAAAAGCAACTGCTACATTAGCTTTTCTTAACACAAGATTAGGAGTTAAACCATCACCTATAGTAGCTGCATTTTCATCAAGAGGGCCTAATTTTCTAACACTTGAAATTCTTAAACCTGATATAGTAGCTCCTGGTGTGAACATTCTTGCTGCATGGAGTGGAGTTACTGGTCCATCAAGTTTATCAACAGATCATAGAAGAGTGAAATTTAATATACTTTCCGGAACTTCGATGTCATGTCCTCATGTAAGTGGAATCGCCGCTTTGATCAAAGCTAAACATCCTGATTGGAGTCCGGCCGCTATAAAATCAGCAATCATGACAACAGCTTATGTTCATGATAATACTATTAAGCCTCTTAGAGATGCTTCATCTGCTGAATTTTCAACTCCTTATGATCATGGTGCTGGTCACATTAATCCTAGAAAAGCTCTTGATCCTGGTTTAGTATATGATATTGCACCTCAAGATTATTTTGAGTTTCTTTGCACACAGAAACTAAGTCCTTCAGAATTAGGAGTGTTTGCCAAAAATTCAAACAGAATTTGCAAACACACTTTTGCTAGTGTTGGTGACTTGAACTATCCAGCTATATCAGTAGTGTTTCCAGAGAAAATAACCGGTTCGGTTTCGACGGTTCATAGAACTGTTACCAATGTTGGACCTGCTGTTTCAAAATATCATGTCATTGTTACACCATTCAAAGGTACTGTTGTTAAGATTGAACCAGATACATTGAATTTTACAAGAAAATATCAGAAATTGTCTTATAAGATTAGTTTCAAAGTTACAACTAGGCAAAGTGAACCAGAATTTGGAGGTTTGGTGTGGAAAGATGGGGTGCATAAAGTAAGAAGTCCCATTGTGATAACATATCTTCCACCAATGTGA 2229 0.389 MDHSAKPDIFSTHLEWYSSKVKSVLSESVESDKDNNEEERIIYSYNTAFHGMAAKLSQEEAKKLESEAGVVAIFPETKYELHTTRSPYFLGLEPFQSSNNSLSEKLVNHDVIVGVLDTGVWPESESFNDAGMKPVPSHWKGACETGRGFRNNHCNKKIVGARIFYHGYEAATGKIDEQADYKSPRDQDGHGTHTAATVAGSPVRGANLLGYAYGTARGMAPGARIAAYKVCWTGGCFSSDILSAVDTAVADGVNVLSISLGGGVSSYNHDSLAVAAFGAMEKGVFVSCSAGNSGPDPVSLTNVSPWITTVGASTMDRDFPADVSLGNGRKITGTSLYKGKTMLSVRKQYPLVYMGGNSSSPDPRSLCLEGTLDRRIVAGKIVICDRGISPRVQKGQVVKNAGGVGMILTNTAANGEELVADCHLLPAVAIGEKEGKEIKQYVLTNKKATATLAFLNTRLGVKPSPIVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGVTGPSSLSTDHRRVKFNILSGTSMSCPHVSGIAALIKAKHPDWSPAAIKSAIMTTAYVHDNTIKPLRDASSAEFSTPYDHGAGHINPRKALDPGLVYDIAPQDYFEFLCTQKLSPSELGVFAKNSNRICKHTFASVGDLNYPAISVVFPEKITGSVSTVHRTVTNVGPAVSKYHVIVTPFKGTVVKIEPDTLNFTRKYQKLSYKISFKVTTRQSEPEFGGLVWKDGVHKVRSPIVITYLPPM 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05502 742 Pfam Fibronectin type-III domain 638 736 IPR041469 -
Trre1g05502 742 CDD Peptidases_S8_3 79 557 IPR034197 -
Trre1g05502 742 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 82 IPR037045 -
Trre1g05502 742 FunFam subtilisin-like protease SBT1.5 316 459 - -
Trre1g05502 742 Pfam Peptidase inhibitor I9 2 82 IPR010259 -
Trre1g05502 742 PRINTS Subtilisin serine protease family (S8) signature 520 536 IPR015500 -
Trre1g05502 742 PRINTS Subtilisin serine protease family (S8) signature 108 127 IPR015500 -
Trre1g05502 742 PRINTS Subtilisin serine protease family (S8) signature 186 199 IPR015500 -
Trre1g05502 742 Gene3D Peptidase S8/S53 domain 110 604 IPR036852 GO:0004252|GO:0006508
Trre1g05502 742 ProSitePatterns Serine proteases, subtilase family, serine active site. 521 531 IPR023828 -
Trre1g05502 742 Gene3D - 316 460 - -
Trre1g05502 742 Pfam PA domain 348 438 IPR003137 -
Trre1g05502 742 Gene3D - 608 739 - -
Trre1g05502 742 CDD PA_subtilisin_like 322 452 - -
Trre1g05502 742 ProSiteProfiles Serine proteases, subtilase domain profile. 87 591 - -
Trre1g05502 742 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 735 IPR045051 -
Trre1g05502 742 FunFam Subtilisin-like protease SBT1.5 110 329 - -
Trre1g05502 742 Pfam Subtilase family 110 561 IPR000209 GO:0006508|GO:0008236
Trre1g05502 742 SUPERFAMILY Subtilisin-like 81 595 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05502 Trre-Chr1 60490402 60493071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05502 1 742 Subtilisin-like Serine Gene Family AT5G51750 72.005 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05502 - - psat:127098601 1360.13