Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05501 ATGTCCACGTCATCACCACCACCACCTCAAACTAACAACAACCATACCTCCACCGTCATCCCCGGTTGCTCTTTCTTCCTCGCACTTCTCCACTGCCTTCGCAACAAAAAACGAACTACTCCATCCTCCGATTCAGACTCCAACCCTCCTCACCCTTTCTCATACTCCCTCCTCCGTCGCGCAACTAATTCCTTCTCCACTATCCTCGGTCATGGCGGCTTCGGTCCTGTCTACTCCGGTATCCTCTCTTCCTCCGGTAAACCAATCGCTGTCAAGCTAATGAACTCCACAACCCTCAACGGTCAAGGTGAACGTGAATTCCACAACGAACTCTTCTTCGCTTCTAGACTTCAATCCAACCTCCTTGTCCCTGCAATCGGTTTCTCCTCCGATCCAAAACGCCGTCGTTTTGTTCTCGTCTACGACCTTATGCAAAACGGTAACCTCCATGAAGCTCTCTTCCGTCGGAAATGTCCTGAATTAACGCTATGGAAAACAAGGTTTTCTATAATTATCGATATAGCTAAAGGAATTCAATATCTTCATTCGTGTGATCCACCGATTATTCACGGTGATATTAAACCTAGTAATATTCTTCTTGATCATTCCTTTTCTGCTAAAATTGCTGATTTTGGACTTGCTAGGTTGAAAAACCTTTCCCCTTTCGAAATCCGAAAAGAGGGATTTGATAGTGATGAAACGGAAATTGAAAGTGTTTTCACTAGCTTTGAGGATTATGAGACAGATATGGTTGGTGTTAGTGGTGGTGGTGGTGGTGGTGGAGTGAAGAAGAGTGGGAGTGTGAAGGATTATGTGATGGATTGGATTGGAAAAGAGGTGAAGGAAGAAAAGTTGAAGAATGATGATTTGGTGGGTGGAAGTGGAAGTGGAAAGGGAGAGAAAAGCAAGAGCAAGAAGAAATTGGAATGGTGGGAATCAATGGATGAGAGAAAGGGAAAGAGTAATTTGAAGAAGAACAAGGAGAAGAAAAGACCAGCAAGGGAATGGTGGAAGGAGGAGTATTCTCAAGAGCTTGAAAACAAGAACAAGAATAAGAAAAAGGGTGGAAAAAATGGTGATAATTGGTGGGAATGGGAGAGAGATCATGATGTGAAAAAAGGTAGTAGTAAAAGCCGTAGCAGAAAGGATCGTGGTAGCGGTGATTCATGGTTTAGTGGTGAGTTAAGGAAAGTTAATTGGAATAGTTATGATTCATATAATAGTGGAGAAATTCATAAGAGTGGTGAAATCAGTAGTACTGCAAGTATGAGAGGAACTGTTTTTTATGTTGCTCCTGAGAATGGTTATAGTGGTGGTGATGTAACAGAGAAGTGTGATGTTTATAGTTTTGGTGTGTTATTGCTTGTTCTTGTTTCTGGGAGAAGACCTCTTCAGGTGAATGATGGTGGTAGTAGTGGTGGTAATAGATTGACACAGTTTAAGCGAGCGAATTTGGTGTCTTGGGCTAGACATTGTGCACGTAATGGGAAACTACTTGAACTTGTTGATCCTTCTGTTGAATTGTTGTTATTGGATGATAAAGAGCAGGTTCTTTTATGCATCAAAATTGCATTGCTTTGTTTGCTCAAGTCACCTAATCGTCGTCCTTCAATGAAAGAAGTTGCGGGAATGCTTTGTGGGGAATTGGAACCGCCTCAGTTGCCGTCTGAGTACTCACAATCTCGATACCAATTCAAGAATGGAAAAGAACGTTCATCATGA 1722 0.4239 MSTSSPPPPQTNNNHTSTVIPGCSFFLALLHCLRNKKRTTPSSDSDSNPPHPFSYSLLRRATNSFSTILGHGGFGPVYSGILSSSGKPIAVKLMNSTTLNGQGEREFHNELFFASRLQSNLLVPAIGFSSDPKRRRFVLVYDLMQNGNLHEALFRRKCPELTLWKTRFSIIIDIAKGIQYLHSCDPPIIHGDIKPSNILLDHSFSAKIADFGLARLKNLSPFEIRKEGFDSDETEIESVFTSFEDYETDMVGVSGGGGGGGVKKSGSVKDYVMDWIGKEVKEEKLKNDDLVGGSGSGKGEKSKSKKKLEWWESMDERKGKSNLKKNKEKKRPAREWWKEEYSQELENKNKNKKKGGKNGDNWWEWERDHDVKKGSSKSRSRKDRGSGDSWFSGELRKVNWNSYDSYNSGEIHKSGEISSTASMRGTVFYVAPENGYSGGDVTEKCDVYSFGVLLLVLVSGRRPLQVNDGGSSGGNRLTQFKRANLVSWARHCARNGKLLELVDPSVELLLLDDKEQVLLCIKIALLCLLKSPNRRPSMKEVAGMLCGELEPPQLPSEYSQSRYQFKNGKERSS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05501 573 MobiDBLite consensus disorder prediction 549 573 - -
Trre1g05501 573 MobiDBLite consensus disorder prediction 287 308 - -
Trre1g05501 573 SUPERFAMILY Protein kinase-like (PK-like) 47 557 IPR011009 -
Trre1g05501 573 Pfam Protein kinase domain 419 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05501 573 Pfam Protein kinase domain 67 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05501 573 Gene3D Transferase(Phosphotransferase) domain 1 55 237 - -
Trre1g05501 573 PANTHER OS07G0586332 PROTEIN 264 566 IPR044576 -
Trre1g05501 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Trre1g05501 573 ProSiteProfiles Protein kinase domain profile. 63 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05501 573 SMART serkin_6 63 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05501 573 Gene3D Transferase(Phosphotransferase) domain 1 400 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05501 Trre-Chr1 60484391 60486112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05501 425 545 Receptor kinase-like Gene Family AT3G58690 34.426 2.78e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre1g05501 Pkinase 7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05501 - - psat:127097028 818.535