Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05498 ATGAGTGTTAGCCGGCCACCAAAGATATTACTTTATACACCTCCAGATCATAATAATACAAATCTCAATTCTATCAAAGATAACAATAAGAAGATGGTTCATAGGGAGATTGAGAAGCAAAGAAGACAAGAAATGGCTACTCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTCGCTTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAAGGAGTGAATTACATAAATCACATGAAGAAGAATATAAAAGAACTTAGTGACAAGAGAGATGAACTGAAAAAAATCTCCAATCTTTCAAACCTCAAAAACCATGCATCTTGTAGTTTCAGTATTCACAAGAATAATGGAACTATTGGAATTGAAATCAGTAGCTTTAGAGATAAGGAAAGGGTCCCACTTTCTAAATTGCTAGAACAATTGATGAGAGTAGGACTTGAAGTTGTTAGTTGCTTTTCAATTGAAGTCAATGGAAGATTACTCCACAGTGTGCAGTGTGAGGTTATTGATTCTGACAGTGTAGATCTATGTGAGCTAAAAAGGAAATTTTCCAATATGAATCCATCATTTAGTTGTTCTGATTAA 591 0.3469 MSVSRPPKILLYTPPDHNNTNLNSIKDNNKKMVHREIEKQRRQEMATLHASLRSLLPLRFIKGKRSLSDQMNEGVNYINHMKKNIKELSDKRDELKKISNLSNLKNHASCSFSIHKNNGTIGIEISSFRDKERVPLSKLLEQLMRVGLEVVSCFSIEVNGRLLHSVQCEVIDSDSVDLCELKRKFSNMNPSFSCSD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05498 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 81 IPR011598 GO:0046983
Trre1g05498 196 Pfam Helix-loop-helix DNA-binding domain 30 81 IPR011598 GO:0046983
Trre1g05498 196 FunFam Transcription factor bHLH126 21 109 - -
Trre1g05498 196 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 23 184 - -
Trre1g05498 196 Coils Coil 78 98 - -
Trre1g05498 196 CDD bHLH_AtORG2_like 30 104 - -
Trre1g05498 196 Gene3D - 21 109 IPR036638 GO:0046983
Trre1g05498 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 97 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05498 Trre-Chr1 60472848 60473796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05498 34 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.030 5.23e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05498 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05498 - - gmx:100804315 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05498 1 60472848 60473796 Trre1g05498 1 60472848 60473796 ECH
Trre11g01434 11 14076467 14079943 Trre1g05498 1 60472848 60473796 PCT