Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05497 ATGTTTCCTTTACAACGATGCAATGAACTGTCGATCCCGTTATCTAATAGTCTCAACCACCACCCACATCACAAAATCCCCGAAGATCTGATTCTTGATGATTGTGATTCTCTTGTTTTTGATTTTTCTCATAAAAAAATGAGTGTTAGCCGGCCACCAAAGATATTACTTTATACACCTCCAGATCATAATAATACAAATCTCAATTCTATCAAAGATAACAATAAGAAGATGGTTCATAGGGAGATTGAGAAGCAAAGAAGACAAGAAATGGCTACTCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTCGCTTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAAGGAGTGAATTACATAAATCACATGAAGAAGAATATAAAAGAACTTAGTGACAAGAGAGATGAACTGAAAAAAATCTCCAATCTTTCAAACCTCAAAAACCATGCATCTTGTAGTTTCAGTATTCACAAGAATAATGGAACTATTGGAATTGAAATCAGTAGCTTTAGAGATAAGGAAAGGGTCCCACTTTCTAAATTGCTAGAACAATTGATGAGAGTAGGACTTGAAGTTGTTAGTTGCTTTTCAATTGAAGTCAATGGAAGATTACTCCACAGTGTGCAGTGTGAGGTTATTGATTCTGACAGTGTAGATCTATGTGAGCTAAAAAGGAAATTTTCCAATATGAATCCATCATTTAGTTGTTCTGATTAA 729 0.3498 MFPLQRCNELSIPLSNSLNHHPHHKIPEDLILDDCDSLVFDFSHKKMSVSRPPKILLYTPPDHNNTNLNSIKDNNKKMVHREIEKQRRQEMATLHASLRSLLPLRFIKGKRSLSDQMNEGVNYINHMKKNIKELSDKRDELKKISNLSNLKNHASCSFSIHKNNGTIGIEISSFRDKERVPLSKLLEQLMRVGLEVVSCFSIEVNGRLLHSVQCEVIDSDSVDLCELKRKFSNMNPSFSCSD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05497 242 Gene3D - 67 155 IPR036638 GO:0046983
Trre1g05497 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Trre1g05497 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 143 IPR036638 GO:0046983
Trre1g05497 242 CDD bHLH_AtORG2_like 76 150 - -
Trre1g05497 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 69 230 - -
Trre1g05497 242 Coils Coil 124 144 - -
Trre1g05497 242 Pfam Helix-loop-helix DNA-binding domain 76 127 IPR011598 GO:0046983
Trre1g05497 242 FunFam Transcription factor bHLH126 67 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05497 Trre-Chr1 60472710 60473796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05497 80 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.030 2.34e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05497 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05497 - - gmx:100775836 275.789