Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05491 ATGCAAATGTCTATTCTATGTTCATCACTCCGTTCTTCACTACCTTTGGAACTCATCAAGGGAAAGCGTTCAGTATCAGATCACATAGGTGAGGCTGCAAATTATGTTCAATTTTTGAAGCAAAATATTAATGAACTTGAAACAAAGAGGGATAAGCTCAAAGAAATGGCTAGTTTAAGTATGGTTGAGACCGGAAAAGAATTATCATCAGATCCTTCAAGATTAGTGAAGTGTGTCAAGATTAATCTCATTCAAGGCGGGGTTGAAATTGTAATATGTAGCGGTTTCGAGGATTTCAGTTCGCGTTTATCGGATTTAATGAAAATAATACTTGAAGAAGGATGTGTTGTTCATTGTGTTACCAACCAAGTAAATGGGAAGATTTTTCATACTATTAAATCTGATGTGAAGGACTTGACATGCCTCAATCTTGCTCGGCTGCAATACAAACTGGATCATGCAATCTTATTGTCAAGTGGTGATTGGTGTTGA 492 0.3659 MQMSILCSSLRSSLPLELIKGKRSVSDHIGEAANYVQFLKQNINELETKRDKLKEMASLSMVETGKELSSDPSRLVKCVKINLIQGGVEIVICSGFEDFSSRLSDLMKIILEEGCVVHCVTNQVNGKIFHTIKSDVKDLTCLNLARLQYKLDHAILLSSGDWC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05491 163 Coils Coil 29 56 - -
Trre1g05491 163 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05491 Trre-Chr1 60454379 60456233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05491 2 160 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 33.526 8.09e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05491 - - ccaj:109790384 199.904