Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05490 ATGTCCTTGAAATGTTTATGTTGTTTTCTTTCTAATGAAGAAGAGCATAGCCAAAGAAGGAATGTCGATGACAAAAAAAATATTGTTAGGGACTATCCATGGGACAGATACACCTTGAAGGAATTGCTTCGTGCAACAAACAACTTTCATCAAGATAACAAGATTGGAGAAGGTGGATTTGGAAGTGTATATTGGGGTCAAACAAGTAAAGGCGTCGAGATTGCTGTGAAGAGGTTGAAGACAATGACTGCAAAAGCAGAGATGGAATTTGCAGTTGAAGTGGAAGTACTTGGAAGGGTGAGGCATAGGAATTTGTTAGGATTGAGGGGATTCTATGCAGGAGGAGAAGAAAGATTAATTGTCTATGATTACATGCCTAATCATAGTTTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGTCTAGAAGAATGAGCATAATAATTGGTGCAGCTGAAGGTTTAGCGTATTTACACCATGAAGCAAATCCACACATAATTCATAGAGACATAAAAGCAAGCAATGTTCTTCTAGACACAGAGTTTCAAGCCAAGGTAGCTGATTTTGGTTTTGCAAAGCTAATACCAGCAGGTGTAAGCCATCTAACAACAAGGGTTAAAGGCACACTTGGTTATTTAGCACCAGAATATGCTATGTGGGGTAAAGTTTCTGAAAGTTGTGATGTTTATAGTTTTGGAATTTTGCTTTTGGAAATTATAAGTGCTAAAAAACCAATTGAAAAACTACCTGGTGGAATAAAAAGAGACATTGTTCAATGGGTCACACCTTATGTACAAAAGGGTGTTTTTAAGCATATTGCTGATCCAAAATTGAAAGGGAATTTTGATTTAGAACAATTGAAATCAGTGATTATGTTAGCTTTGAAGTGCACTGATGGTAGTCCTGATAAAAGGCCTAGTATGGAAGAGGTAGTGGAATGGCTTAGGGGTGGTGTTTCAAAGACAAAAAAAGAGATTTCAAATTTGAGTAACACTAAGGATGATAATGAAGGAAATGATGAAAACTATGAAGAGTTTGTAACAATGCAAACCAATAATTTGAAAATAATAAGTGATAATGATAGGCGTAAAATGAGATGA 1116 0.3602 MSLKCLCCFLSNEEEHSQRRNVDDKKNIVRDYPWDRYTLKELLRATNNFHQDNKIGEGGFGSVYWGQTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWSRRMSIIIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPAGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFKHIADPKLKGNFDLEQLKSVIMLALKCTDGSPDKRPSMEEVVEWLRGGVSKTKKEISNLSNTKDDNEGNDENYEEFVTMQTNNLKIISDNDRRKMR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05490 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 332 - -
Trre1g05490 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 21 124 - -
Trre1g05490 371 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05490 371 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Trre1g05490 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 125 336 - -
Trre1g05490 371 Gene3D Transferase(Phosphotransferase) domain 1 125 337 - -
Trre1g05490 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre1g05490 371 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trre1g05490 371 ProSiteProfiles Protein kinase domain profile. 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05490 371 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Trre1g05490 371 Pfam Protein kinase domain 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05490 Trre-Chr1 60431801 60433854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05490 20 352 Receptor kinase-like Gene Family AT5G45780 41.593 1.49e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trre1g05490 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05490 - - gmx:100817283 600.512