Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05482 ATGGGAAGAGGAAAGGTAGTTTTGGAGAGAATACAGAACAAAATCAATAGACAAGTAACATTCTCAAAGAGAAGGAGTGGTTTGCTGAAGAAAGCATTCGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCTTGGCAAGCTTTTTCAATACAGTTCCACTGACTTGAACAAAATCATTGAGAAGTATCGCCAATGTTGCTTCAATAATATGTCGAATAATGACAACTTGGGAGAACACGAGTCACAGAGCTTACACGAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTAGCACGGACTCAAAGGATTTTTTTGGGTGAAGAACTCAATGCACTTGGCATAAAAGATTTGCAGAGTATAGAGAAACAACTGGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATGCAAAAGATGGTGGCAAAAGTTGATGAATTACGCGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAACAATTAAAATCCGAGGAAAGAGGTATAAGCACCAATATTTGTGACAGTATGACTGACAATACCATCGCCAATTTGCTTGATGCACAAGTCAATCAGTTTGATTATGGGACAACAAGTCGGTTTGGGCACCAACAAGCTGCATCAATAGGGCAGGCAACGGATACGAACATTGACATTGATAGAGGACAAAGCAGTCACAACAAGACCAATGGATGGATGAATTTTTGA 726 0.4091 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSNLGKLFQYSSTDLNKIIEKYRQCCFNNMSNNDNLGEHESQSLHEELLMLRVKHESLARTQRIFLGEELNALGIKDLQSIEKQLERTLAQARKHQMQKMVAKVDELREEVHKVEEVNKQLKSEERGISTNICDSMTDNTIANLLDAQVNQFDYGTTSRFGHQQAASIGQATDTNIDIDRGQSSHNKTNGWMNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05482 241 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g05482 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Trre1g05482 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre1g05482 241 Coils Coil 122 171 - -
Trre1g05482 241 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Trre1g05482 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Trre1g05482 241 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Trre1g05482 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Trre1g05482 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g05482 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05482 Trre-Chr1 60329545 60338744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05482 1 169 MADS-box Gene Family AT2G45650 52.071 2.31e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre1g05482 K-box 8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05482 K09264 - gmx:100802197 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05482 1 60329545 60338744 Trre1g05482 1 60329545 60338744 ECH
Trre1g05482 1 60329545 60338744 Trre11g01421 11 13893958 13897709 PCT