Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05478 ATGGGCAAGGATAATTGGTATTGGGGTGGAAGATCTTCCAACAACAAGAGAAAACCTGAATCAGATATCCCTTCTGGTTGCATGTGTGCTGTTTTTCAAGCCTTTGATTTTCATCCCTTTAACTTTTCCATTAACCAACAACAAACCACTCTCAACTCTCCTTCTCCCATACAAACTCTCCCCAAAGGAGCTGAAGCACCTAGGAATAGCTTGGAATCAGAAGATGGTACATTCTCATCCATCTCCAAAGAAGATAATTTCAAATTCCCAAAGAACATAAGAATCAAAACAGGTTCAGACAAAAGTTTCAATGATATTTCCTCTCCAGGAACCAAAACACCAACTTTGGTTGCAAGATTAATGGGTCTTGATCTTCTTCCTGATGCAAATTCACCCTCTTCATCTTCTTCTTCATCACTCTCCACTCCAAACAGACAAGGTCATTACCACAATAGATCAAAGCAAGACAACATCAAAATAATGAAACATAGACACAGCACAGACAGTGTCATCATGCGTTCAACCTTGCCTGAAACACCAAGATTGTCCTCAGAAAGAACATCATATGTTGAACATAGACTATCTCTCCAAATCAACAAAGAAAACAGAAATCTTGGTGAAGATTTGGACACTCCTCGGTCTTCATTTTCAAAAAGGAAATTTTTTGATGATAACAACAATTGTAGAAGTCCAAGTCATTATGCAAGACAAATTGTTAAGCAAGTGAAAGAAAGTGTGAGTAGAAAAGTTGGTCTTGACATAACCAACACAGTGAAAAACAGAGAACAAGTTAAACAAGAATTTGTTGGTCAAATCAAATTCAAGAAAGCTCTAAAACCATTAGAAGAATCAAACCAAGGAAACAAAAACACATCTCATTCCCCAAGACTCAGCAGATTCAATGATACAAACCACAAACATTCACCAAAAAAAGACCAAAACCAAAACACACTCCAAGTACTAAAACAATCATCACCACCACCACCACCTGTAGTCAACATTGAAGCACATGTTTCAAGAGTTTCAACAAAGCCAAAACTTCAAGCAATGTCAGAGAAGGAGGACAAAAATACTTTCCCTAAATGCAAGAAAACACCACATAGGAATTTGAGTCCACGGATCAACAACAACAAACCTCCACAGTCATCATCAATCAGAAACAAGCAAGAGGAATCATTCATCCTCCGACCATCATCATCAGCCACTAAAGCTAATGATATCAAAACCAAAAGCAAAAGAACTCATCCACTTTCAAACAACTCTGTCCCAAATCTTCTCCCTCTCAAAACACACCCTTCCCCTTTAGCTACAAAAATCCCTCAAAAACAGGTAAATGATGATGTCCAAGAAGCCAAAAACATGTCACAGTTATTTAATTGTTCGCGCCAGAAGTACACACTCGCCACCCGAGGAACCGCCACCGGAGTTGAAGACGAAGGATCATCAGAATACCAATATATCACAACCATTCTAAGCCGTACCGGAATACACAGAGAAACAGTAACCAGCCTTCAACATTTTCAATGGTTCTCTTCAACACATCCATTAGACCCATCAATTTTTCACCGTCTTGAACTCTACCCAACAACTAATTCCTTAGTTTCAATTCCCAACAACCATAAAGATATCAACTTTACGCAGAAAAATCAACTGGGTCCACGTTGTAACCGTAGATTACTATTTGATTTAGTCGATGAAGTGTTGTCGGAGATTCTCATTAAACCAAAATGTTACCGTGGGTTGTTATTGGAGACAGTATGGAAAAAAGTACGGAGTTTCCCACGTGCGAAATGTGACGTTTTAGAAGACATTGATGGGTTGATAGAGATGAAGGAAGTGATGGATAAGGTGAAGGAAGAAGAAGAAGAAGAGGAAAAGTTGGTAGCAGAAATTGAAGGAAAAGTATTGGAGATGTTGGTGAATGAAACGTTAACCGTTATGGTGGGTCCGTACGAAAAGAACGGCGTCGTTTTGTGA 1977 0.389 MGKDNWYWGGRSSNNKRKPESDIPSGCMCAVFQAFDFHPFNFSINQQQTTLNSPSPIQTLPKGAEAPRNSLESEDGTFSSISKEDNFKFPKNIRIKTGSDKSFNDISSPGTKTPTLVARLMGLDLLPDANSPSSSSSSSLSTPNRQGHYHNRSKQDNIKIMKHRHSTDSVIMRSTLPETPRLSSERTSYVEHRLSLQINKENRNLGEDLDTPRSSFSKRKFFDDNNNCRSPSHYARQIVKQVKESVSRKVGLDITNTVKNREQVKQEFVGQIKFKKALKPLEESNQGNKNTSHSPRLSRFNDTNHKHSPKKDQNQNTLQVLKQSSPPPPPVVNIEAHVSRVSTKPKLQAMSEKEDKNTFPKCKKTPHRNLSPRINNNKPPQSSSIRNKQEESFILRPSSSATKANDIKTKSKRTHPLSNNSVPNLLPLKTHPSPLATKIPQKQVNDDVQEAKNMSQLFNCSRQKYTLATRGTATGVEDEGSSEYQYITTILSRTGIHRETVTSLQHFQWFSSTHPLDPSIFHRLELYPTTNSLVSIPNNHKDINFTQKNQLGPRCNRRLLFDLVDEVLSEILIKPKCYRGLLLETVWKKVRSFPRAKCDVLEDIDGLIEMKEVMDKVKEEEEEEEKLVAEIEGKVLEMLVNETLTVMVGPYEKNGVVL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05478 658 MobiDBLite consensus disorder prediction 369 405 - -
Trre1g05478 658 MobiDBLite consensus disorder prediction 128 148 - -
Trre1g05478 658 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g05478 658 MobiDBLite consensus disorder prediction 347 362 - -
Trre1g05478 658 Coils Coil 607 637 - -
Trre1g05478 658 Pfam Domain of unknown function (DUF4378) 483 642 IPR025486 -
Trre1g05478 658 MobiDBLite consensus disorder prediction 283 298 - -
Trre1g05478 658 MobiDBLite consensus disorder prediction 127 158 - -
Trre1g05478 658 MobiDBLite consensus disorder prediction 48 83 - -
Trre1g05478 658 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 649 - -
Trre1g05478 658 Pfam DUF761-associated sequence motif 107 131 IPR032795 -
Trre1g05478 658 MobiDBLite consensus disorder prediction 279 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05478 Trre-Chr1 60305024 60307313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05478 108 651 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 31.886 6.11e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05478 - - mtr:11417683 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05478 1 60305024 60307313 Trre1g05478 1 60305024 60307313 ECH
Trre11g01419 11 13881190 13884745 Trre1g05478 1 60305024 60307313 PCT