Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05475 ATGGAAAATATGGGGCTCTTCTCCATTGTTAGGTGCTTGAAAGCTTCAAAACACAGTCAACGTATCAGAAACTCTGCCTCTCTGCAAGAGACACAGATGGAAATGAATCCTAATCCTAACGGCGGCGCTTGTTTCAGTGAAGAAAACGGCACACACAGTACCGATATGTCACCGTCGGAGACGACGGAAGCAGCGGTAATGAAAGAAGAGTTGACGGAAGCTGATAACCACAACCGTCAAGAGTCACTTGCGGTGGGTGTTGTTCCGATGCCGATGACAATGGCAGTGCCGAAAGCGAAGAGACAATCAAAAGACCGTCACACGAAGGTGGACGGACGTGGTCGGAGAATCAGAATGCCGGCACCCTGCGCCGCGAGGATCTTCCAGCTGACAAAGGAGCTTGGTCACAAGACTGATGGAGAAACAATACGGTGGTTGCTTGAACAAGCTGAACCTGCGATCATTGAAGCCACTGGCACTGGAACTGTTCCTGCCATCGCTGTTTCAGTCGGTGGCACGCTGAAAATTCCAACTACATCGGTGGCGAGACCGGTCGCCGGTGAAGATACTCCAAGGAAACGAAGGAAGAGACCATCAAACAGTGAATTTGTTGATGTGAATGATCAAGTTTCAATGTGTTCTGGTTTAGCACCAATTGCTCAAACACCATACAGTGGCGCTGCCGTCAACGGCGGTGAAAATGGTGGTGCTGGTGGTGGTGGTTTGGTTCCTTTATGGCCTGTGGTGAGTAATGGTGTGTCTAATCAAACAGGGCCATATTTCATGTTCCCACATTCAGTTATGAATCAACCACAGTTTTGGGCTATTTCTGCTGCACCTTTTTTCAATGTGCAAAATAGACCCATTTCTGATTATGTTTCCTCTGCTATGCAAATGCAACAAAATCAATTACCTTCAAATGCTTCTGCTAATGCTAATTCTTCATCTACTTTGGTTCCTTGTTTGAACTCAGCAATTTCAACAACTTGTTCTGCTGCTTCATCTTCTTCTGCAGGAACCCCACAAATGCTTAGGGATTTCTCTTTGGAAATATATGACAAGAAAGAGCTACAGTTTATGGGTTGTTCTTCTGCAAATTTAGGATCACCTCCTACTTCAAACCCTTCAAATTGA 1134 0.4594 MENMGLFSIVRCLKASKHSQRIRNSASLQETQMEMNPNPNGGACFSEENGTHSTDMSPSETTEAAVMKEELTEADNHNRQESLAVGVVPMPMTMAVPKAKRQSKDRHTKVDGRGRRIRMPAPCAARIFQLTKELGHKTDGETIRWLLEQAEPAIIEATGTGTVPAIAVSVGGTLKIPTTSVARPVAGEDTPRKRRKRPSNSEFVDVNDQVSMCSGLAPIAQTPYSGAAVNGGENGGAGGGGLVPLWPVVSNGVSNQTGPYFMFPHSVMNQPQFWAISAAPFFNVQNRPISDYVSSAMQMQQNQLPSNASANANSSSTLVPCLNSAISTTCSAASSSSAGTPQMLRDFSLEIYDKKELQFMGCSSANLGSPPTSNPSN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05475 377 MobiDBLite consensus disorder prediction 182 202 - -
Trre1g05475 377 ProSiteProfiles TCP domain profile. 103 157 IPR017887 -
Trre1g05475 377 Pfam TCP family transcription factor 102 179 IPR017887 -
Trre1g05475 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 355 IPR005333 GO:0003700
Trre1g05475 377 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05475 Trre-Chr1 60270163 60271691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05475 97 360 TCP Transcription Factor Family AT5G51910 51.264 2.06e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre1g05475 TCP 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05475 - - tpra:123922458 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05475 1 60270163 60271691 Trre1g05475 1 60270163 60271691 ECH