Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05474 ATGGCAAACTCCATAAACAAAAAAGTTCACACTAAAATGACCATACTATCTCTCATTTTACTGTTGTACCCTCAAGTTGCATACTCTTACAGCCCAGATTACAATTTAGCAATCAATTGTGGCTCCTCAACAGGCAGTACTGCCCCAGCAGATACACGACTTTGGGTTGGTGATGATATTGTTAACTCCAATCTCTTTACTTTCACTGAACCAAAAACTGCAAACCCATCTCTTAACTTAAATCCTAAGACCCTTTCAAATATCCAAACTCCATACACAGCCGCACGTATCTCACTCTCAAATTTCACATACTCTTTTCCTATCAATATCACTTATTCCCCTGTTTTTATTCGCCTTCATTTTTACCCAACTTCATATCAAAACTTCCAACTTTCTAATGCAATTTTTTCTGTTCAAGTAAACAACAACCTTACCCTTCTTAAAAACTTCAACCTTTCACTTTGGCTTCATAATGATGATCAGCAAACAATCACCAAAGAATATTGCATCCAAATCAAACCAAATGAAAATTTGCTAAACATAACTTTCACTCCAAACAATAAGAACCAATCAAATCTTTATTATGCTTTCATTAATGCAATTGAAGTTGTGTCTATGCCTTCTTTTCTCTATTACACAGACCTTAATGACACAAATTATCATTTGAAATCACTTGACTTTGACAACACAGAGTACCAAATTCGTAGTGACAAAGCATTGGAGATGGTTTATAGAGTCAATGTTGGTGGTAATCAAGTTCCACCAAGTAAAGATACAGGTATGTTTCGTTATTGGGATAATGATTTTCCTCGTTACCTGGAGAAACAATATCCAAATAGTGTACAAAGTGATTATGGAGATCAGCTAAACTATTTAGAAAACACCATTCCAAATTACACTGCACCAGAAGATGTATACTTAACTGCAAGAACTTATGGATTGGATGCAACAGAGGATTATAATGTAACTTGGAATTTTGAAGTTGATTCTGCTTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTATCAACAATGAAGGTGATAGAGTCTTTCAGATTTTTATAAATGATATTTTGGCTGAAAGATATGCTGATGTGTTTTCATGGAGTGGTGGTCGATTGGTTCCTGTTCATAAGGATTATGTTGTGACTATGGACTCTCAAGGAGCAAGTGGTAAAATTGAAAGAGTTAATCTTTCAATCAACCTTCAACTGGAATTAAATTATTTTTACACAACATTCCGCCATGTTATACTAAATGGAATTGAGATTTTGAAAGTAAGTCATGTAAATTTCAGTCTTGCAGGATTAAGTCCCAAATATTTATCACGCCAACAACCAAAGCCAAAAATTTCAACCATAGTCATCATGGTTGTGATTTGTGTTTCATCATGTCTCTTGCTCTCATTTGTTGTTGTGGGAATAATAGTTTTTGTTAGACGGAGAAGAACACTTGAATTTTCGTTGAAAACAAAGAAAGAAGGAACGTCAACAATACCATCGCATTTGTGCCGCTACTTTACAATTGCAGAGATCAGAGCAGCCACAAAAAACTTCAATGATGCTTTAATCATCGGTGTCGGAGGGTTTGGCAATGTGTATAAAGGTTGCATTGATGATGGATCCACACCTGTTGCCATAAAACGCCTCAAATCAGGCTCTCAACAAGGTGCTAATGAGTTCATGAACGAAATCGAGTTGCTCTCCCAACTTCGCCACATTCACTTGGTGTCCCTCGTGGGGTATTGCAACGATGATACAGAAATGATTTTGGTTTATGAGTTCATGCAGAACGGTACTCTTTGTGAGTATCTTTATGGTTCTAATAAGCAACCTTTACCGTGGAGGCAAAGGCTTGAGATTTTGTTAGGTGCTGCGAGAGGACTACATTATCTTCATGCTGAGGTGAAGCACAAGATAATACATCGTGACGTAAAGAGCACTAACATATTGCTAGATGAGAAATGGGTAGCTAAGGTTTCCGACTTCGGTTTATCCAAAGTGGGACCCACAGGGATATCGACAACCCACGTCAGCACGATGGTGAAGGGGAGCCTTGGGTATTTAGATCCTGAGTACTATATGTTCCAAAGGCTTACTCTAAAATCTGATGTGTACTCCTTTGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTAGGCCACCTTTGGTTCGCGATTTGGATAAGAACACAGCTAGTCTAGTTTGTTGGTTTCAAAGGTGTTGCGATGAAGGTATGGCAGTTGAACAATTAGTGGATCCATTCCTAAGGAATTCTATCGCAAGTGAGTGTTTGAAATATTATTGCAAGTTGGCGTTGAGTTGTTTGCTTGATGATGGGAATCAACGACCCACAATGACTCAAGTGGTTGGGGGTTTAGAGTTCGCATTGCAGTTGGTGGCGAGTGAGGAAGATAGCCAATTTGGTAGCACCAAAATTGAGGAAAGTTATAACAAAGTACCACATTTCTTGCAGTTTATAAGTGATGAAGACAGTGACCTACATATGGCAAGATCTCATTCCTACAAGGAGAGCACAGTCTCAGCGAGGCCGAGTACTAAGGAACATCAATTCTCCATGAATGAAAATCTTAGAGCCCGATCATATTCATGTCAAAACTTTAAAATTTAA 2631 0.3793 MANSINKKVHTKMTILSLILLLYPQVAYSYSPDYNLAINCGSSTGSTAPADTRLWVGDDIVNSNLFTFTEPKTANPSLNLNPKTLSNIQTPYTAARISLSNFTYSFPINITYSPVFIRLHFYPTSYQNFQLSNAIFSVQVNNNLTLLKNFNLSLWLHNDDQQTITKEYCIQIKPNENLLNITFTPNNKNQSNLYYAFINAIEVVSMPSFLYYTDLNDTNYHLKSLDFDNTEYQIRSDKALEMVYRVNVGGNQVPPSKDTGMFRYWDNDFPRYLEKQYPNSVQSDYGDQLNYLENTIPNYTAPEDVYLTARTYGLDATEDYNVTWNFEVDSAFTYMVRLHFCEFINNEGDRVFQIFINDILAERYADVFSWSGGRLVPVHKDYVVTMDSQGASGKIERVNLSINLQLELNYFYTTFRHVILNGIEILKVSHVNFSLAGLSPKYLSRQQPKPKISTIVIMVVICVSSCLLLSFVVVGIIVFVRRRRTLEFSLKTKKEGTSTIPSHLCRYFTIAEIRAATKNFNDALIIGVGGFGNVYKGCIDDGSTPVAIKRLKSGSQQGANEFMNEIELLSQLRHIHLVSLVGYCNDDTEMILVYEFMQNGTLCEYLYGSNKQPLPWRQRLEILLGAARGLHYLHAEVKHKIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLCARPPLVRDLDKNTASLVCWFQRCCDEGMAVEQLVDPFLRNSIASECLKYYCKLALSCLLDDGNQRPTMTQVVGGLEFALQLVASEEDSQFGSTKIEESYNKVPHFLQFISDEDSDLHMARSHSYKESTVSARPSTKEHQFSMNENLRARSYSCQNFKI 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05474 876 Pfam Protein tyrosine and serine/threonine kinase 526 790 IPR001245 GO:0004672|GO:0006468
Trre1g05474 876 ProSitePatterns Protein kinases ATP-binding region signature. 526 549 IPR017441 GO:0005524
Trre1g05474 876 CDD STKc_IRAK 526 790 - -
Trre1g05474 876 ProSiteProfiles Protein kinase domain profile. 520 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05474 876 FunFam FERONIA receptor-like kinase 35 207 - -
Trre1g05474 876 Gene3D - 238 430 - -
Trre1g05474 876 Gene3D - 32 207 - -
Trre1g05474 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Trre1g05474 876 PANTHER OS03G0124300 PROTEIN-RELATED 14 487 IPR046957 GO:0004672
Trre1g05474 876 FunFam FERONIA receptor-like kinase 238 429 - -
Trre1g05474 876 Gene3D Transferase(Phosphotransferase) domain 1 597 816 - -
Trre1g05474 876 Gene3D Phosphorylase Kinase; domain 1 483 596 - -
Trre1g05474 876 SUPERFAMILY Protein kinase-like (PK-like) 496 795 IPR011009 -
Trre1g05474 876 Pfam Malectin domain 243 387 IPR021720 -
Trre1g05474 876 Pfam Malectin domain 35 190 IPR021720 -
Trre1g05474 876 SMART serkin_6 520 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05474 876 FunFam Receptor-like protein kinase FERONIA 597 815 - -
Trre1g05474 876 FunFam Receptor-like protein kinase FERONIA 492 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05474 Trre-Chr1 60259891 60262521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05474 27 809 Receptor kinase-like Gene Family AT3G51550 44.377 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre1g05474 Malectin_like 1.3e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05474 - - mtr:25497555 1114.37