Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05468 ATGGCTGTTGCCGAGAGCGGCAGCAGCATTGAACGCTCAACTTCATTCAACTGTTACAAAGTAGCAAGTTTGACTGAAACCATATTGAACGCAAAGCAAACTTCTAATTTGAAAGATCGATACATTCTAGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATTAGAACATGCTCCGACAAAACAACTGGAGAGGTTTTGGCATGCAAATCAATTGCTAAAGATAAGCTGGTTACTTCAGATGATATGCAAAGTGTTAAACTTGAGATTGAGATCATGGCGAAGTTATCCGGGCACCCTAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGCAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGCTGTTTCACCTGTTAGAGAAGCATGGAAGGTTTTCTGAATCTGAAGGAAGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCACGAAAATGGGGTTGTTCACCGAGATTTGAAGCCTGAAAACATTCTCTTAGCAACTAAGTCGTTTTCGTCACCAATTAAATTGGCTGACTTTGGTCTTGCAACCTACATTAAGCCTGGGCAGAGTTTGCATGGTTTAGTTGGGAGTCCATTTTATATAGCTCCGGAGGTATTGGCAGGTGCATATAACCAGGCTGCCGATATTTGGAGTGCCGGGGTTATTCTTTACATTCTACTTAGCGGGATGCCGCCATTTTGGGGAAAGACAAAGTCTCGAATATTTGAAGCCGTTAAGGCTGCTGATTTGAGATTTCCATCTGAACCTTGGGATCGCATCTCTAAATCTGCTAAGGATTTAATTAGGCGAATGCTCTGCAGAGAAACTTCTCAAAGGCTCACTGCCCAAGAGGTTTTGGACCATTGCTGGATGGAAAGCGATCCAACAAATCCGGAACAACTAAGTGAACATAAAATCGAAAGTTGTGGAGAGTGGCATGTTGACGGTGGCTCCTTCTCTGCATCATTTATGTCGAGGAATGATGACATCAGCTTTGGCGCTGGATCACCTACATGTGACGCTCAATCACCTACATTCACATGCAAATCATCGTTTTCTTCCATTTTCGTGGAACCAGTTACACCTTTTTCTGCGCCTAGTGGGTTTTCATTTCGGAGCACAGGTGGTTCCATTGGTTTGGAATTTTCTTCGCCCGTTTCCTCGATGCCGAGCTTTGCATTTCTCAGTCCCAATTCTGTTGAGCAAAATAGTCTTATATTCGAGTTCTCATCTAACACGACAGAAGTAAATGCAATTGCTGGAGATTCTCCACTTTCCCTTGGAAATGACGTTAAAGAAAGGGATCACAAACCTGTAGAGACGAAAAGGGCATGTGTAACAAATTGTTACAGGACATTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGTGAGTGTGAGCAACTTGATTTTGTTGTGACCGAATCAGTCATTCGTTGGTTATCATGCACACAACTTCCCACATCACCAAAATCATCTCTTGTCTGTTGA 1521 0.4339 MAVAESGSSIERSTSFNCYKVASLTETILNAKQTSNLKDRYILGEQLGWGQFGVIRTCSDKTTGEVLACKSIAKDKLVTSDDMQSVKLEIEIMAKLSGHPNVVDLKAVYEEADFVHLVMELCAGGELFHLLEKHGRFSESEGRVLFRHLMQMVLYCHENGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISKSAKDLIRRMLCRETSQRLTAQEVLDHCWMESDPTNPEQLSEHKIESCGEWHVDGGSFSASFMSRNDDISFGAGSPTCDAQSPTFTCKSSFSSIFVEPVTPFSAPSGFSFRSTGGSIGLEFSSPVSSMPSFAFLSPNSVEQNSLIFEFSSNTTEVNAIAGDSPLSLGNDVKERDHKPVETKRACVTNCYRTLGFHSKRNRTIGLGECEQLDFVVTESVIRWLSCTQLPTSPKSSLVC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05468 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Trre1g05468 506 SUPERFAMILY Protein kinase-like (PK-like) 38 374 IPR011009 -
Trre1g05468 506 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Trre1g05468 506 FunFam Calcium-dependent protein kinase 1 43 126 - -
Trre1g05468 506 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
Trre1g05468 506 CDD STKc_CAMK 40 298 - -
Trre1g05468 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 310 - -
Trre1g05468 506 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05468 506 Gene3D Transferase(Phosphotransferase) domain 1 128 322 - -
Trre1g05468 506 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05468 506 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Trre1g05468 506 Pfam Protein kinase domain 43 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05468 Trre-Chr1 60204225 60206803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05468 25 308 EF-hand Containing Proteins AT5G04870 51.761 1.31e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g05468 Pkinase 1.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05468 - - psat:127091783 909.057