Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05465 ATGTTTACTATGAATCATATTGCGGAGCCACATGATCCATGTTCATCTTCAGTGAGGTTTCTTGCTGAGACTATGCCAAAGAAACCTGCAGGGAGGAAGAAGTTCAGGGAAACGCGCCACCCTGTATACCGTGGTGTGAGAAAGAGGGATTCAGGCAAATGGGTTTGTGAAGTGAGAGAACCTAACAAGAAAACCAGAATTTGGCTTGGGACATTTCCTACTCCAGAGATGGCTGCGCGTGCGCACGACGTTGCTGCTATTGCGCTTAGAGGAAGGTCTGCTTGTCTTAACTTTGCTGACTCTGCTTGGAGTTTGCCGGTTCCTGCTACGGCGGATGCAAGGGATATTCAAAAAGCAGCTGCTGAGGCAGCGGAGAAGTTCAGGCCAGAGACTGAGTTTGAGAATAGTGAGGAGAGGAAGGATAGTGAGACTTCATCAACGGTGGCAGTGGAGGTGGAGGAGACGGTGATGGAGCAACGAGAGGAAGAAGAAGAAGACACGGTGCCGGAATATTTGAGAAACATGGTACTTATGTCACCGGCAAATTATTGGGGGAGTGAATGTGAATATGATATTGCTGACGTGGAATTTGGTGGTGATACTGAAGTTTCATTGTGGAGTTTTTCAATTTAA 633 0.4724 MFTMNHIAEPHDPCSSSVRFLAETMPKKPAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSACLNFADSAWSLPVPATADARDIQKAAAEAAEKFRPETEFENSEERKDSETSSTVAVEVEETVMEQREEEEEDTVPEYLRNMVLMSPANYWGSECEYDIADVEFGGDTEVSLWSFSI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05465 210 MobiDBLite consensus disorder prediction 125 147 - -
Trre1g05465 210 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Trre1g05465 210 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Trre1g05465 210 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Trre1g05465 210 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 MobiDBLite consensus disorder prediction 125 149 - -
Trre1g05465 210 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Trre1g05465 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 207 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05465 Trre-Chr1 60188035 60188667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05465 21 208 AP2-EREBP Transcription Factor Family AT4G25470 54.412 9.29e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g05465 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05465 - K09286 lja:Lj5g3v2028390.1 265.003