Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05464 ATGGATGGCAACAACAACGTTGCTGCAGTACCACCACCACCTATACAAATCCCTAATGTAGTGACTTCTTCATCAACATCAGCACCAACAACTCCATCATCTCCGGCAACGCCAGGAGTAGTCCTCGGGAGACGATACCGAGGAACACGTTGCCGGAGTGGAAAATGGGTATCTGAGATACGTGAGCCACGTAAAACAAAACGCATTTGGTTAGGAACATACCCTACAGCTGAAATGGCTGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGAAACTACTCTTAACTTTCCTGATTCAATTCCTTCTTACCCTATTCCTGCTTCATTGTCTTCAACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAACTAGAATCATGAGAGTCACTCCTCCTCCTCCTTCTCCTCAACAACAACAACAACAACAACAAAAAACTTCATCTTCTGGTTTCGAAGGATCTTCTTCTTCAGCACCTAGTGGAGTAGTGCAAGAATATATTGATGAAGATGAGTTGTTGAATATGCCAAATTTGTTAGATGAAATGGCTAGAGGAATGCAGAATTGGCATTAA 585 0.4342 MDGNNNVAAVPPPPIQIPNVVTSSSTSAPTTPSSPATPGVVLGRRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPETTLNFPDSIPSYPIPASLSSTDIRAAAEAAAQTRIMRVTPPPPSPQQQQQQQQKTSSSGFEGSSSSAPSGVVQEYIDEDELLNMPNLLDEMARGMQNWH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05464 194 ProSiteProfiles AP2/ERF domain profile. 36 101 IPR001471 GO:0003700|GO:0006355
Trre1g05464 194 MobiDBLite consensus disorder prediction 132 167 - -
Trre1g05464 194 SMART rav1_2 45 107 IPR001471 GO:0003700|GO:0006355
Trre1g05464 194 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Trre1g05464 194 MobiDBLite consensus disorder prediction 143 166 - -
Trre1g05464 194 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Trre1g05464 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 185 - -
Trre1g05464 194 FunFam Ethylene-responsive transcription factor 2 44 102 - -
Trre1g05464 194 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Trre1g05464 194 MobiDBLite consensus disorder prediction 1 41 - -
Trre1g05464 194 MobiDBLite consensus disorder prediction 19 37 - -
Trre1g05464 194 Pfam AP2 domain 50 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05464 Trre-Chr1 60149204 60150739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05464 46 190 AP2-EREBP Transcription Factor Family AT5G52020 53.103 2.37e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g05464 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05464 - - psat:127091780 211.46