Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05462 ATGAAAGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGGGCTCTCGATCGGATAGAATTTGGTCGAAAGGGGCGCAGACTTCGTGTAGAATGGACAAAGGGAGAACGTGGCATCCGGAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGCAAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACTAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGATTCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATAATAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTTCTTCTAAAGATGATGACGCTAGGAGAAATGGACATAGCCCGGAGAGGGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGACCCAGTCCATATAAGAGAGAAAGGAGCAGCCCTGACTATGGGCGTGGCAACAGCCGTAGTAGAAGCCCCCCCTATAAGCGGGAGAGGAGTAGCCCTGCTTATGGGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGGCACCAGCCGCAGTCCTTATCACAAAGAGCGGGCGAGAACTGGCCGGTCTCCCTCTCAGAGTCCCGAAGAAGGAGAGAGGATAGACCTTCGAAATGATCACGGATCTGACCATAGTCCTTATGATACTTTGAAGGATAGCCCTGAAAATGGCCATCACCGGAGGCATAGTCCTGATGCAATAAGGAACCCCAGCCCCTACAATGATTCTAGAAGAAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGTCCATACAATGATTATGGAGGGAGCCCAAATACTGTGCCTGAACCTAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAGCAATATCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1173 0.4817 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKGERGIRRPAERPKRSSANARPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSEDDASKALEATNNSKLLDRVISVEFSSKDDDARRNGHSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPPYKRERSSPAYGRRSISPYRRERDGSEPVRGTSRSPYHKERARTGRSPSQSPEEGERIDLRNDHGSDHSPYDTLKDSPENGHHRRHSPDAIRNPSPYNDSRRSPSPDAKGNPSPYNDYGGSPNTVPEPRDSPNYGGPESPMHEQYRSQSQSPPAEE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05462 390 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Trre1g05462 390 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 338 - -
Trre1g05462 390 MobiDBLite consensus disorder prediction 376 390 - -
Trre1g05462 390 MobiDBLite consensus disorder prediction 232 324 - -
Trre1g05462 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Trre1g05462 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Trre1g05462 390 MobiDBLite consensus disorder prediction 327 354 - -
Trre1g05462 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Trre1g05462 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Trre1g05462 390 SUPERFAMILY RNA-binding domain, RBD 3 169 IPR035979 GO:0003676
Trre1g05462 390 SMART rrm1_1 3 70 IPR000504 GO:0003723
Trre1g05462 390 SMART rrm1_1 97 163 IPR000504 GO:0003723
Trre1g05462 390 MobiDBLite consensus disorder prediction 167 390 - -
Trre1g05462 390 Gene3D - 86 180 IPR012677 -
Trre1g05462 390 Gene3D - 1 85 IPR012677 -
Trre1g05462 390 MobiDBLite consensus disorder prediction 167 225 - -
Trre1g05462 390 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05462 Trre-Chr1 60120570 60123596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05462 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 22.222 1.18e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05462 K12893 - gmx:100796509 578.556