Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05450 ATGGGATTTCTCCGGCGACTCTTTGGCGCCAAAAAACCGGGTCATCCCTCTGATGGGTCGGGTACCAAATCTGGTAAAGACAATAACAAGAAAAAATGGAGCTTCGCCAAACAAAGCGGCAGAAAAAAGTCACTCCCGCCACCTCCGCCGCCGCAACCAACTACCTTTACACAATTTGACTCCTCCACTTCCTTAGAACGTAACAAACATGCAATTGCTGTCGCCGCTGCTACCGCAGCAGTTGCCGAGGCAGCTCTAACCGCCGCACGTGCTGCTGCAGAGGTGGTTAGATTGACAAGCAACGGTGTCGGTGGAAGTAGTACCGTAAGCAGACCCAAAGCGCGTGTTGCACGGTTGCCGGTGGAGACCGCCGCCGTTAGAATACAATCAGCTTTCCGCGGTTATTTGGCTAGGAGGGCGTTGAGAGCACTAAAATCATTAGTAAAGTTGCAAGCATTGGTTAGGGGCCACATAGTGAGAAAGCAAAGTGCAGATATGCTTAGGCGTATGCAAACATTGGTTCGACTGCAGACACAGGCACGTGCAAGTCGTGCCCACTTATCATCATCAGATAATTTGCATTCCTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAGCATCCACATCCTGTCTACAGTACAAAATTCGGTGGATCTTCCATCCTCAAGAGAAGCAGTTCCAATGCAAATTTTAGGAAGATTGAGTCAGAGAAACCACGTTATGGTACCAATTGGTTAGACCATTGGATGCAAGATAACTCATGTAACAAAATCAAAGACACTCCATCAAAAAATCGACAAGCCGATAATCAAAAAAGCGACAAGATTCTCGAAGTTGATACTTGGAAGCCACATGATTCTCCATCAAAACATTCGACAAAACATCAAAGTCAAAGTCTCTCACGAACCGCAGATAATAGTCCACAAACATTCTCTGCTTCTTCAAAAACTGGAAATGGTGTAAGGAGAGGTACACCCTTTACACCTACAAGAAGTGAGTGTTCATGGAGTTTCTTAGGTGGATACTCTGGTTACCCCAATTACATGGCAAACACTGAATCTTCTAAAGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCCTGAGTTTGAGAGATGCAGTTCTACTAGAAGACCTTTTCAAGGATTTTGGGATGTGGGGCCTACTAATTCAGACCAAGATTCTGAATATGAATATTCAAGGAGTAACAAAGTCTCACCTGCTTTGAGTCGTTTTAATAGAATTGGAAGTAGTAATAATTTAAGGTGA 1284 0.4455 MGFLRRLFGAKKPGHPSDGSGTKSGKDNNKKKWSFAKQSGRKKSLPPPPPPQPTTFTQFDSSTSLERNKHAIAVAAATAAVAEAALTAARAAAEVVRLTSNGVGGSSTVSRPKARVARLPVETAAVRIQSAFRGYLARRALRALKSLVKLQALVRGHIVRKQSADMLRRMQTLVRLQTQARASRAHLSSSDNLHSFKSSLSHYPVPEEYEHPHPVYSTKFGGSSILKRSSSNANFRKIESEKPRYGTNWLDHWMQDNSCNKIKDTPSKNRQADNQKSDKILEVDTWKPHDSPSKHSTKHQSQSLSRTADNSPQTFSASSKTGNGVRRGTPFTPTRSECSWSFLGGYSGYPNYMANTESSKAKVRSQSAPRQRPEFERCSSTRRPFQGFWDVGPTNSDQDSEYEYSRSNKVSPALSRFNRIGSSNNLR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05450 427 MobiDBLite consensus disorder prediction 297 332 - -
Trre1g05450 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 166 IPR027417 -
Trre1g05450 427 Gene3D - 119 174 - -
Trre1g05450 427 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Trre1g05450 427 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Trre1g05450 427 PANTHER IQ-DOMAIN 5-RELATED 26 397 - -
Trre1g05450 427 MobiDBLite consensus disorder prediction 1 61 - -
Trre1g05450 427 MobiDBLite consensus disorder prediction 260 332 - -
Trre1g05450 427 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Trre1g05450 427 Pfam IQ calmodulin-binding motif 145 162 IPR000048 GO:0005515
Trre1g05450 427 MobiDBLite consensus disorder prediction 360 408 - -
Trre1g05450 427 Pfam Protein of unknown function (DUF4005) 311 375 IPR025064 -
Trre1g05450 427 SMART iq_5 120 142 IPR000048 GO:0005515
Trre1g05450 427 SMART iq_5 143 164 IPR000048 GO:0005515
Trre1g05450 427 MobiDBLite consensus disorder prediction 266 296 - -
Trre1g05450 427 MobiDBLite consensus disorder prediction 391 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05450 Trre-Chr1 60048131 60052862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05450 1 387 IQD Protein Family AT5G62070 46.944 1.04e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05450 - - gmx:100783694 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05450 1 60048131 60052862 Trre1g05450 1 60048131 60052862 ECH
Trre11g01337 11 13062032 13068327 Trre1g05450 1 60048131 60052862 PCT