Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05446 ATGGGGTTTGAGAGTGTCAACAACAGTTCCTTTAAGGTTGCAAGACTTGTCACTGATTTTTCTATACCCTTTTCCAGTTCAATGCAAAATTCTTCTACCTTCTTCTCATCTCAAAGAAAAATGGAGGGTCAGAGTGAGATTGGTCTCACTAGTGAAAGTTTAGATACTAGTATGATAGGGAGAATGAGGGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATATTGAAGGAATATCTGGTGATGATCAGGATGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATATCATAGACACACACCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAAGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGATCTTAGTAAGAGACTTGGCTTGGAAAATAAACAAGTCAAGTTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAGCTGGAAAGACATGAGAACATAATGCTTAGGCAAGAAAATGACAAGCTAAGAGGGGAGAATAGTATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGCGGACCAGCAATTCCTGGCCAAATTTTGTTCGAAGAGCACCAGATTAGAATTGAAAATGCTCGTCTAAAAGACGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTCGGCAAACCAATATCATCTTTGGCTAATCCCATGGCTCTACCAACCTCGAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGTTTCGGTGGAGGTTCAAGCTCTCACGGCGCTTCTTTACCAATGGGACTTGATCTTGGAGATGGTCCTGCGATGCTTGGTATTAGGTCGCCAATGGGATTGATGGGAAATAATAATGATGTTCAGCTCGAGAGATCGGTGCTTATAGATCTTGCATTGGCTGCAATGGATGAATTATTAAAGATGGCTCAGACAGATAATCCTATTTGGATTAAGGGATTGGATGGAGAAAGGGACATATTGAATCATGAAGAGTATTCAAGGTCGTTTTCTTCTTGTATTGGTCCAAAACCCACCGGTTTTGTCTCTGAAGCTACAAGAGAAACTGGCATAGTAATAATCAACAGTTTAGCCCTGATGGAAACTTTGATGGATGCGAATCGATATGCAGATATGTTTCAGTCATTGATAGCTAGATCGGTCAATCTTGATGTTTTATCGGGTGGCATTGGTGGAACAAGAAACGGTGCTATACATTTGATGCATGCCGAGGTTCAATTGCTTTCACCACTAGTCCCAGTTCGTCAAGTGAAAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTTGTTGATGTTTCTGTCGAGATCGGTCACGATGCTGCCAATGCTCAACCTTTCATTAGCTGTAGAAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTTACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACAATCTTTATCGTCCATTGATTATTTCTGGTTCGGGATTCGGCGCTCATAGATGGATTGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATTCTCATGTCCTCTTCCATCTCAAGTGATGATCACACTGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGCATGACAAACAACTTCTGTTCCGGTGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTTCAAATGGGGACCTTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCCGGCGAGCCTCCCGGTATTGTGCTCAGTGCTGCTACATCTGTTTGGATGCCAGTTTCACGGCAAAGGCTGTTTGATTTTCTGCGTGATGAACGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCAATGCAAGAGATGGTTCACATTGCCAAAGGACAAGGACAAGGAAATTGTGTTTCTCTTCTTCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGTTAATTCTGCAAGAGACATGGATGGATACATCGTGCTCTGTCGTGGTGTACGCGCCTGTTGACGGGCAATCATTGAACGTGGTGATGAGTGGCGGTGATTCTGCGTATGTGGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGACGGCAATAACTCATCTGGCTATGGTGCATCAAACGGAACTTTACAGAAAGGTGGTGGCAGCGACGATGGTGGAAGTTTACTCACAGTTGGATTCCAAATTCTGGTGAATAGTCTCCCATCTGCTAAGCTCACAATGGAGTCAGTTGATACAGTGAACAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTCAAGTCGCATAA 2379 0.4367 MGFESVNNSSFKVARLVTDFSIPFSSSMQNSSTFFSSQRKMEGQSEIGLTSESLDTSMIGRMREDEYESRSGSDNFDIEGISGDDQDGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPTSNSGLELGIGRNGFGGGSSSHGASLPMGLDLGDGPAMLGIRSPMGLMGNNNDVQLERSVLIDLALAAMDELLKMAQTDNPIWIKGLDGERDILNHEEYSRSFSSCIGPKPTGFVSEATRETGIVIINSLALMETLMDANRYADMFQSLIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRQVKILRFCKQHAEGVWAVVDVSVEIGHDAANAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHNLYRPLIISGSGFGAHRWIATLQRQCEGLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNNSSGYGASNGTLQKGGGSDDGGSLLTVGFQILVNSLPSAKLTMESVDTVNNLISCTIQKIKAALQVA 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05446 792 Pfam START domain 304 526 IPR002913 GO:0008289
Trre1g05446 792 SMART START_1 303 527 IPR002913 GO:0008289
Trre1g05446 792 SUPERFAMILY Bet v1-like 296 527 - -
Trre1g05446 792 SUPERFAMILY Bet v1-like 554 786 - -
Trre1g05446 792 SMART HOX_1 94 157 IPR001356 GO:0003677
Trre1g05446 792 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Trre1g05446 792 ProSiteProfiles START domain profile. 294 530 IPR002913 GO:0008289
Trre1g05446 792 MobiDBLite consensus disorder prediction 38 57 - -
Trre1g05446 792 CDD homeodomain 95 153 IPR001356 GO:0003677
Trre1g05446 792 CDD START_ArGLABRA2_like 298 526 - -
Trre1g05446 792 Gene3D - 83 168 - -
Trre1g05446 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 790 IPR042160 -
Trre1g05446 792 Coils Coil 147 167 - -
Trre1g05446 792 FunFam Homeobox-leucine zipper protein HDG1 82 169 - -
Trre1g05446 792 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Trre1g05446 792 SUPERFAMILY Homeodomain-like 82 153 IPR009057 -
Trre1g05446 792 MobiDBLite consensus disorder prediction 58 73 - -
Trre1g05446 792 MobiDBLite consensus disorder prediction 38 107 - -
Trre1g05446 792 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05446 Trre-Chr1 60014850 60019183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05446 21 790 Homeobox Transcription Factor Family AT3G61150 58.698 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre1g05446 START 3.3e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05446 K09338 - gmx:100785102 1233.39