Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05443 ATGGCTTCTTCTTTCAACATTCTTGTATTATCGTACCTTGTCGTATTCCATTTCCACCCATGTTACGCGATTGAACACAAAAATGACCAAAACCCAGAAAAACTTTCCCTCCTTTCTTTCAAAGGGTCTCTTCAAAATTCTCACTTTCTTTCTTCATGGCACGCTGCAACTCCACACTGTAACTGGGTTGGTGTAACGTGTCAACTCGGACGAGTCACCGAGCTCCAACTTCCTTCTCTTTACCTCAGAAGCAATCTCTCTCTGTCTCTTTCGTCTCTCTCTTATCTATCATCTCTCACCATACTCAACCTTGAGGATAATCAGTTTTCCGGTGATATCCCCGGCGAAATTGGTGGGTTGTTTCAGCTGCAAACACTTGACCTTTCCGGCAATGCACTCACCGGAGAAGTACCAGAGAGTTTCGGAAACTTGACAGAGCTTCAGTTTCTTGACCTCAGCAACAACTTTCTCTCAGGTTCTCTTCCGTTAACTCTCTTCACCGGAACACTGTCTTTGATTTCTATTGATATTTCAAACAACTCATTTTCCGGCGAGCTTCCGGCGGAAATTGGAAACTGGAAGAATCTCACTGCACTTTACGTTGGGATTAACAAGTTGTCTGGTAAATTGCCTAAGGAAATTGGTGAGCTTGGGAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATCGAAGGTCCATTACCTGAAGAAATGGAAAAGCTTGAATCGTTGACCAAACTTGACCTTTCTTATAACCCTTTGAGATGTTCAATTCCAAGGTTTATTGGAAAGTTGAAAATTTTGAAAATTTTGAACCTTGTTTTTTCTGAGCTTAATGGGTCAATTCCACCTGAGTTAGGAAATTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCACTTTCTGGTTCACTTCCTCAAGAGCTTTCTCAGCTTCCTATAAAGACATTTTCAGCTGAAAAGAATCTTCTTCGTGGAGCTTTGCCTTCTTGGCTTGGAAAATGGGCTAATGTTGATTCTCTGTTGCTTTCAGCTAACCGATTTTCCGGTGTGATTCCACCTGAGATTGGAAATTGTTCTGTCATGGAGCATCTAAGTTTGAGTAGTAATTTGTTGACAGGTTCTATACCTGAGGAGCTTTGTAATGCTGCTTCACTCTTGGAGATTGATCTTGATGATAACTACCTTGGTGGTTCAATTGAGAAAGCTTTTGTAAATTGCAAGAATCTTACTCAGTTGGTTTTGATGAACAATCAGATTGTTGGTTCTATCCCAAACTACCTTTCTGAGCTTCCTTTGATGGTGTTGGACTTGGATAACAACAATTTTAGTGGACAGATACCTTCTAGTTTGTGGAACTTATCAACACTGATGGAATTTTCTGCTGCTAATAACCAATTAGAGGGTTCTCTTCCTATGGAGATTGGTAATGCTGTTATTCTACAAAGGCTTGTTCTTAGCAACAATCGTTTGATCGGTACTATTCCTAAGGAAATTGGAAGTCTTTCGAGTCTTTCGGTTTTTAATTTGAATGGAAACATGCTTGAAGGAAACATTCCAAGTGAGCTTGGTGATTGCATTTCACTTACTACATTGGACCTTGGAAACAATCAGCTCAATGGCTCAATTCCTGACAAATTGGTGAAACTGAGTGAATTACAGTGCCTAGTTCTTTCTCACAATAATTTGTCTGGCTCTATACCTGCCAAAGAATCTTCGTATTTTCGACAACTTACCGTTCCTGATTTGAGCTTTGTTCAACACCTTGGTGTATTGGATCTTTCTCACAATAGATTGTCTGGCACCATACCTGATGAATTAGGGAACTGTGTAGTGGTTGTTGATCTATTGCTTAGCAACAACATGTTTTTCGGTAGCATACCAAGATCACTCTCGCGCTTGACAAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCACTAGAGCTTGGAGATGCTGTGACACTGCAAGGTTTATATTTGGGACATAATCAACTCTCCGGTGCAATCCCTGGAAGTTTTGGGAAGTTGACTCGTTTGGTGAAGCTGAATTTAACAGGAAATATGCTGGATGGTCCAATTCCAATCAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAGCTCACTGGCGAGCTTCCATCCATTATGTCGGGTGTGCAAAGTCTAGTTGGTCTTTACGTGCAGAATAACAGGCTTTCAGGCCATGTCGGCGAGCTTTTCTCGAACTCCATGACATGGAGGATTGAGACGATGAATTTAAGTTGTAATTGCTTCGACGGGAACTTGCCATGGTCTTTGGGAAATCTTTCCTACCTAACAATTTTGGATCTTCACCGAAATCTGTTGACCGGAGAGATTCCTTTAGACCTAGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTAACCGGAAAAATTCCAGAGAAGCTATGCAGCCTAGTTAATTTGAATTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATTCCTAGAACTGGTATTTGCCAAAACCTATCAAGAGTTAGATTTTTGGGAAACAGAAACCTTTGTGGCCAGATGTTGGGAACAAATTGTGAGGTCAAAAGCATTGGTAGATATGGATTGTTTAATGCATGGAGGCTTGGTGGAATTGCAATCACAGTCATATTAATAACCTTGATCTTTGCTTTTCTTCTGCATAGATGGATTAGCAGAAAGCACAATGATCCTGAGGAACTCGAGGATAGGAAACTGAACAGCTATGTGGATCAAAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACCTTGGTTGATATCCTCGAAGCTACCGACAATTTCTGCAAGACAAACGTAATCGGAGATGGAGGTTTCGGAACTGTGTACAGGGCCACTTTACCAAATGGAAGAACAGTTGCTGTGAAGAAGCTTAGCGAAGCTAAAACGCAGGGGCATCGCGAGTTCATGGCTGAAATGGAAACCTTGGGAAAGGTAAAGCATCAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGACCTTTGGTTGAGAAACAGGACTGGGGGACTCGAAATCCTCGACTGGAACAAACGTTACAAAATCGCGACAGGTGCAGCAAAAGGATTAGCTTTCCTCCATCATGGTTTCATACCTCACATCATTCATAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCAAAAGTTGCTGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCACAACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGACGTCTATAGTTTCGGTGTTATTTTACTTGAACTGGTGACCGGCAAAGAGCCGACAGGACCAAATTTCAAAGATATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGACAGGCTGCTGAAGTTCTTGATCCTACGGTTCTCGACGCAGATTCTAAGCAAATGATGCTTCAAATGCTTCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGCGATATCAGTAATTAA 3768 0.4092 MASSFNILVLSYLVVFHFHPCYAIEHKNDQNPEKLSLLSFKGSLQNSHFLSSWHAATPHCNWVGVTCQLGRVTELQLPSLYLRSNLSLSLSSLSYLSSLTILNLEDNQFSGDIPGEIGGLFQLQTLDLSGNALTGEVPESFGNLTELQFLDLSNNFLSGSLPLTLFTGTLSLISIDISNNSFSGELPAEIGNWKNLTALYVGINKLSGKLPKEIGELGKLEVLYSPSCLIEGPLPEEMEKLESLTKLDLSYNPLRCSIPRFIGKLKILKILNLVFSELNGSIPPELGNCSNLTSVMLSFNSLSGSLPQELSQLPIKTFSAEKNLLRGALPSWLGKWANVDSLLLSANRFSGVIPPEIGNCSVMEHLSLSSNLLTGSIPEELCNAASLLEIDLDDNYLGGSIEKAFVNCKNLTQLVLMNNQIVGSIPNYLSELPLMVLDLDNNNFSGQIPSSLWNLSTLMEFSAANNQLEGSLPMEIGNAVILQRLVLSNNRLIGTIPKEIGSLSSLSVFNLNGNMLEGNIPSELGDCISLTTLDLGNNQLNGSIPDKLVKLSELQCLVLSHNNLSGSIPAKESSYFRQLTVPDLSFVQHLGVLDLSHNRLSGTIPDELGNCVVVVDLLLSNNMFFGSIPRSLSRLTNLTTLDLSGNLLSGSIPLELGDAVTLQGLYLGHNQLSGAIPGSFGKLTRLVKLNLTGNMLDGPIPISFGNMKELTHLDLSYNELTGELPSIMSGVQSLVGLYVQNNRLSGHVGELFSNSMTWRIETMNLSCNCFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLTGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGICQNLSRVRFLGNRNLCGQMLGTNCEVKSIGRYGLFNAWRLGGIAITVILITLIFAFLLHRWISRKHNDPEELEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFCKTNVIGDGGFGTVYRATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILDWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPNFKDIEGGNLVGWVGQKIKKGQAAEVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGDISN 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05443 1255 FunFam serine/threonine-protein kinase BRI1-like 2 1050 1255 - -
Trre1g05443 1255 Gene3D Ribonuclease Inhibitor 577 878 IPR032675 -
Trre1g05443 1255 Gene3D Ribonuclease Inhibitor 315 576 IPR032675 -
Trre1g05443 1255 SMART LRR_sd22_2 829 857 - -
Trre1g05443 1255 SMART LRR_sd22_2 707 733 - -
Trre1g05443 1255 SMART LRR_sd22_2 635 656 - -
Trre1g05443 1255 SMART LRR_sd22_2 120 146 - -
Trre1g05443 1255 FunFam leucine-rich repeat receptor protein kinase EMS1 171 316 - -
Trre1g05443 1255 Gene3D Ribonuclease Inhibitor 253 314 IPR032675 -
Trre1g05443 1255 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre1g05443 1255 Gene3D Ribonuclease Inhibitor 29 168 IPR032675 -
Trre1g05443 1255 Gene3D Ribonuclease Inhibitor 169 252 IPR032675 -
Trre1g05443 1255 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515
Trre1g05443 1255 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 583 879 - -
Trre1g05443 1255 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 30 170 - -
Trre1g05443 1255 SMART serkin_6 974 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05443 1255 ProSitePatterns Protein kinases ATP-binding region signature. 980 1003 IPR017441 GO:0005524
Trre1g05443 1255 PANTHER LEUCINE RICH REPEAT KINASE 2 590 1248 - -
Trre1g05443 1255 FunFam serine/threonine-protein kinase BRI1-like 2 935 1049 - -
Trre1g05443 1255 SMART LRR_typ_2 829 854 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 144 168 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 635 659 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 96 119 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 587 611 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 781 805 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 551 575 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 120 143 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 731 754 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 707 730 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 503 527 IPR003591 -
Trre1g05443 1255 SMART LRR_typ_2 241 265 IPR003591 -
Trre1g05443 1255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Trre1g05443 1255 Pfam Protein tyrosine and serine/threonine kinase 977 1246 IPR001245 GO:0004672|GO:0006468
Trre1g05443 1255 SUPERFAMILY L domain-like 319 584 - -
Trre1g05443 1255 SUPERFAMILY L domain-like 577 868 - -
Trre1g05443 1255 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Trre1g05443 1255 SUPERFAMILY Protein kinase-like (PK-like) 955 1246 IPR011009 -
Trre1g05443 1255 ProSiteProfiles Protein kinase domain profile. 974 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05443 1255 Gene3D Transferase(Phosphotransferase) domain 1 1050 1254 - -
Trre1g05443 1255 SUPERFAMILY L domain-like 81 426 - -
Trre1g05443 1255 FunFam Leucine-rich repeat receptor protein kinase EMS1 317 576 - -
Trre1g05443 1255 Gene3D Phosphorylase Kinase; domain 1 936 1049 - -
Trre1g05443 1255 PRINTS Leucine-rich repeat signature 590 603 - -
Trre1g05443 1255 PRINTS Leucine-rich repeat signature 829 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05443 Trre-Chr1 59960299 59964066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05443 29 1247 Receptor kinase-like Gene Family AT5G07280 59.755 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre1g05443 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05443 - - gmx:100780446 2016.12