Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05442 ATGGCTTCTTCTTTCAACATTCTTGTATTATCGTACCTTGTCGTATTCCATTTCCACCCATGTTACGCGATTGAACACAAAAATGACCAAAACCCAGAAAAACTTTCCCTCCTTTCTTTCAAAGGGTCTCTTCAAAATTCTCACTTTCTTTCTTCATGGCACGCTGCAACTCCACACTGTAACTGGGTTGGTGTAACGTGTCAACTCGGACGAGTCACCGAGCTCCAACTTCCTTCTCTTTACCTCAGAAGCAATCTCTCTCTGTCTCTTTCGTCTCTCTCTTATCTATCATCTCTCACCATACTCAACCTTGAGGATAATCAGTTTTCCGGTGATATCCCCGGCGAAATTGGTGGGTTGTTTCAGCTGCAAACACTTGACCTTTCCGGCAATGCACTCACCGGAGAAGTACCAGAGAGTTTCGGAAACTTGACAGAGCTTCAGTTTCTTGACCTCAGCAACAACTTTCTCTCAGGTTCTCTTCCGTTAACTCTCTTCACCGGAACACTGTCTTTGATTTCTATTGATATTTCAAACAACTCATTTTCCGGCGAGCTTCCGGCGGAAATTGGAAACTGGAAGAATCTCACTGCACTTTACGTTGGGATTAACAAGTTGTCTGGTAAATTGCCTAAGGAAATTGGTGAGCTTGGGAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATCGAAGGTCCATTACCTGAAGAAATGGAAAAGCTTGAATCGTTGACCAAACTTGACCTTTCTTATAACCCTTTGAGATGTTCAATTCCAAGGTTTATTGGAAAGTTGAAAATTTTGAAAATTTTGAACCTTGTTTTTTCTGAGCTTAATGGGTCAATTCCACCTGAGTTAGGAAATTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCACTTTCTGGTTCACTTCCTCAAGAGCTTTCTCAGCTTCCTATAAAGACATTTTCAGCTGAAAAGAATCTTCTTCGTGGAGCTTTGCCTTCTTGGCTTGGAAAATGGGCTAATGTTGATTCTCTGTTGCTTTCAGCTAACCGATTTTCCGGTGTGATTCCACCTGAGATTGGAAATTGTTCTGTCATGGAGCATCTAAGTTTGAGTAGTAATTTGTTGACAGGTTCTATACCTGAGGAGCTTTGTAATGCTGCTTCACTCTTGGAGATTGATCTTGATGATAACTACCTTGGTGGTTCAATTGAGAAAGCTTTTGTAAATTGCAAGAATCTTACTCAGTTGGTTTTGATGAACAATCAGATTGTTGGTTCTATCCCAAACTACCTTTCTGAGCTTCCTTTGATGGTGTTGGACTTGGATAACAACAATTTTAGTGGACAGATACCTTCTAGTTTGTGGAACTTATCAACACTGATGGAATTTTCTGCTGCTAATAACCAATTAGAGGGTTCTCTTCCTATGGAGATTGGTAATGCTGTTATTCTACAAAGGCTTGTTCTTAGCAACAATCGTTTGATCGGTACTATTCCTAAGGAAATTGGAAGTCTTTCGAGTCTTTCGGTTTTTAATTTGAATGGAAACATGCTTGAAGGAAACATTCCAAGTGAGCTTGGTGATTGCATTTCACTTACTACATTGGACCTTGGAAACAATCAGCTCAATGGCTCAATTCCTGACAAATTGGTGAAACTGAGTGAATTACAGTGCCTAGTTCTTTCTCACAATAATTTGTCTGGCTCTATACCTGCCAAAGAATCTTCGTATTTTCGACAACTTACCGTTCCTGATTTGAGCTTTGTTCAACACCTTGGTGTATTGGATCTTTCTCACAATAGATTGTCTGGCACCATACCTGATGAATTAGGGAACTGTGTAGTGGTTGTTGATCTATTGCTTAGCAACAACATGTTTTTCGGTAGCATACCAAGATCACTCTCGCGCTTGACAAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCACTAGAGCTTGGAGATGCTGTGACACTGCAAGGTTTATATTTGGGACATAATCAACTCTCCGGTGCAATCCCTGGAAGTTTTGGGAAGTTGACTCGTTTGGTGAAGCTGAATTTAACAGGAAATATGCTGGATGGTCCAATTCCAATCAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAGCTCACTGGCGAGCTTCCATCCATTATGTCGGGTGTGCAAAGTCTAGTTGGTCTTTACGTGCAGAATAACAGGCTTTCAGGCCATGTCGGCGAGCTTTTCTCGAACTCCATGACATGGAGGATTGAGACGATGAATTTAAGTTGTAATTGCTTCGACGGGAACTTGCCATGGTCTTTGGGAAATCTTTCCTACCTAACAATTTTGGATCTTCACCGAAATCTGTTGACCGGAGAGATTCCTTTAGACCTAGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTAACCGGAAAAATTCCAGAGAAGCTATGCAGCCTAGTTAATTTGAATTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATTCCTAGAACTGGTATTTGCCAAAACCTATCAAGAGTTAGATTTTTGGGAAACAGAAACCTTTGTGGCCAGATGTTGGGAACAAATTGTGAGGTCAAAAGCATTGGTAGATATGGATTGTTTAATGCATGGAGGCTTGGTGGAATTGCAATCACAGTCATATTAATAACCTTGATCTTTGCTTTTCTTCTGCATAGATGGATTAGCAGAAAGCACAATGATCCTGAGGAACTCGAGGATAGGAAACTGAACAGCTATGTGGATCAAAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACCTTGGTTGATATCCTCGAAGCTACCGACAATTTCTGCAAGACAAACGTAATCGGAGATGGAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGACGTCTATAGTTTCGGTGTTATTTTACTTGAACTGGTGACCGGCAAAGAGCCGACAGGACCAAATTTCAAAGATATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGACAGGCTGCTGAAGTTCTTGATCCTACGGTTCTCGACGCAGATTCTAAGCAAATGATGCTTCAAATGCTTCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGCGATATCAGTAATTAA 3282 0.4071 MASSFNILVLSYLVVFHFHPCYAIEHKNDQNPEKLSLLSFKGSLQNSHFLSSWHAATPHCNWVGVTCQLGRVTELQLPSLYLRSNLSLSLSSLSYLSSLTILNLEDNQFSGDIPGEIGGLFQLQTLDLSGNALTGEVPESFGNLTELQFLDLSNNFLSGSLPLTLFTGTLSLISIDISNNSFSGELPAEIGNWKNLTALYVGINKLSGKLPKEIGELGKLEVLYSPSCLIEGPLPEEMEKLESLTKLDLSYNPLRCSIPRFIGKLKILKILNLVFSELNGSIPPELGNCSNLTSVMLSFNSLSGSLPQELSQLPIKTFSAEKNLLRGALPSWLGKWANVDSLLLSANRFSGVIPPEIGNCSVMEHLSLSSNLLTGSIPEELCNAASLLEIDLDDNYLGGSIEKAFVNCKNLTQLVLMNNQIVGSIPNYLSELPLMVLDLDNNNFSGQIPSSLWNLSTLMEFSAANNQLEGSLPMEIGNAVILQRLVLSNNRLIGTIPKEIGSLSSLSVFNLNGNMLEGNIPSELGDCISLTTLDLGNNQLNGSIPDKLVKLSELQCLVLSHNNLSGSIPAKESSYFRQLTVPDLSFVQHLGVLDLSHNRLSGTIPDELGNCVVVVDLLLSNNMFFGSIPRSLSRLTNLTTLDLSGNLLSGSIPLELGDAVTLQGLYLGHNQLSGAIPGSFGKLTRLVKLNLTGNMLDGPIPISFGNMKELTHLDLSYNELTGELPSIMSGVQSLVGLYVQNNRLSGHVGELFSNSMTWRIETMNLSCNCFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLTGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGICQNLSRVRFLGNRNLCGQMLGTNCEVKSIGRYGLFNAWRLGGIAITVILITLIFAFLLHRWISRKHNDPEELEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFCKTNVIGDGEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPNFKDIEGGNLVGWVGQKIKKGQAAEVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGDISN 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05442 1093 SMART LRR_typ_2 829 854 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 635 659 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 96 119 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 144 168 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 781 805 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 587 611 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 551 575 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 120 143 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 731 754 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 707 730 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 503 527 IPR003591 -
Trre1g05442 1093 SMART LRR_typ_2 241 265 IPR003591 -
Trre1g05442 1093 SMART LRR_sd22_2 829 857 - -
Trre1g05442 1093 SMART LRR_sd22_2 707 733 - -
Trre1g05442 1093 SMART LRR_sd22_2 635 656 - -
Trre1g05442 1093 SMART LRR_sd22_2 120 146 - -
Trre1g05442 1093 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre1g05442 1093 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515
Trre1g05442 1093 Pfam Leucine Rich repeat 710 723 IPR001611 GO:0005515
Trre1g05442 1093 Pfam Leucine Rich repeat 636 650 IPR001611 GO:0005515
Trre1g05442 1093 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Trre1g05442 1093 FunFam leucine-rich repeat receptor protein kinase EMS1 170 316 - -
Trre1g05442 1093 Gene3D Ribonuclease Inhibitor 29 168 IPR032675 -
Trre1g05442 1093 Gene3D Transferase(Phosphotransferase) domain 1 963 1092 - -
Trre1g05442 1093 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 30 169 - -
Trre1g05442 1093 Pfam Protein tyrosine and serine/threonine kinase 987 1084 IPR001245 GO:0004672|GO:0006468
Trre1g05442 1093 SUPERFAMILY L domain-like 36 314 - -
Trre1g05442 1093 Gene3D Ribonuclease Inhibitor 169 243 IPR032675 -
Trre1g05442 1093 PRINTS Leucine-rich repeat signature 829 842 - -
Trre1g05442 1093 PRINTS Leucine-rich repeat signature 590 603 - -
Trre1g05442 1093 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 984 1082 - -
Trre1g05442 1093 SUPERFAMILY Protein kinase-like (PK-like) 984 1086 IPR011009 -
Trre1g05442 1093 SUPERFAMILY L domain-like 319 584 - -
Trre1g05442 1093 Gene3D Ribonuclease Inhibitor 244 316 IPR032675 -
Trre1g05442 1093 FunFam Leucine-rich repeat receptor protein kinase EMS1 317 576 - -
Trre1g05442 1093 Gene3D Ribonuclease Inhibitor 317 576 IPR032675 -
Trre1g05442 1093 Gene3D Ribonuclease Inhibitor 577 878 IPR032675 -
Trre1g05442 1093 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 583 879 - -
Trre1g05442 1093 SUPERFAMILY L domain-like 576 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05442 Trre-Chr1 59960299 59964066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05442 29 996 Receptor kinase-like Gene Family AT5G07280 54.620 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre1g05442 PK_Tyr_Ser-Thr 1.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05442 - - lja:Lj0g3v0136899.1 1523.84