Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05441 ATGGATCCATCACTTTGTGCCAATGGTTGTGATTTTTATGGTTCTCCTTCAACTAAGAACCTCTGTTCAAAGTGTTACAACGAGTATCTCAAAGAAAACATTGCCAAACCAAATATTAATGATATTTGTGATGCTGTGGAAGCTATTTGTCTCAATGGCAATGGGAACATGAAGAAGAAAAATAGGTGCAAGAGTTGCAACAAAAAAGTGGGATTACTAGGTTTCAATTGCCGTTGTGGGGACGTGTTTTGTGGAATTCATAGATACCCAGAGGAGCATGCATGCAAAGTGAATCTAATGGAGATTGGTCGAAAAATATTGGAAAAACAAAATCCATTATGTATAGCTGATAAGTTAGAACAACGAATCTAA 372 0.3656 MDPSLCANGCDFYGSPSTKNLCSKCYNEYLKENIAKPNINDICDAVEAICLNGNGNMKKKNRCKSCNKKVGLLGFNCRCGDVFCGIHRYPEEHACKVNLMEIGRKILEKQNPLCIADKLEQRI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05441 123 Pfam AN1-like Zinc finger 63 96 IPR000058 GO:0008270
Trre1g05441 123 ProSiteProfiles Zinc finger AN1-type profile. 57 103 IPR000058 GO:0008270
Trre1g05441 123 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 34 - -
Trre1g05441 123 SUPERFAMILY AN1-like Zinc finger 57 117 IPR035896 -
Trre1g05441 123 Gene3D - 1 45 - -
Trre1g05441 123 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 120 - -
Trre1g05441 123 Gene3D - 46 117 IPR035896 -
Trre1g05441 123 SMART AN1_Zf_4 63 100 IPR000058 GO:0008270
Trre1g05441 123 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Trre1g05441 123 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Trre1g05441 123 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05441 Trre-Chr1 59958187 59958558 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05441 5 121 C2H2 Transcription Factor Family AT3G52800 33.333 4.86e-23 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05441 - - tpra:123902604 228.024