Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05440 ATGGCTCCTTCGGCGGAATACAACGGCAATTCTTCCACCAGCGAGTCTCAAAGATCCACTCCCACGCCGTTTCTCACAAAGACATATCATCTCGTTGATGACCGCACCATCAACGACGTCATTTCATGGAACGATACTGGAACTTCCTTCATCGTTTGGAATCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAACGAATGTTTCAGAAGAGGCGAAAAACACCTTCTCTCTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGTGCCGGCTTCAAATGCAACAGTGGCGGTTCCGACGGGAAATACGATCGTGTCGCCGTCAGTCTCAGGGGAGGAGCAGGTTATTTCTTCGAATTCTTCACCGTCGATTTCTCCGGCGGAGATTTTGGACGAGAACGAGAAGCTGAGAAAGGAGAATATGCAGTTAACGAAGGAAATAGAGGACATAAAATCGCTCCACAACAATATATTCAATCTTTTGTCGAATTATGCTAAATCTCAATCGGAAGGTGGTGCGCAAGGAAAAGAGTGTTGCTCCACAGCGGCGGCGACGCTTCCTTTGTTGCCGGAGAATCGGTGCGACGGAGAAGTTGAAGCGGCGGTGATGGCGATGAAGGATATAAACCCGAAACTGTTTGGGGTAGCGATTGGTACGAAGCGAGCGAGAAAAGAAGAACGGTGTGTGGAGGATAATACGGTGTTGAGCCTGGATCAACCAGTTTATGCGGATGTGAAATCAAAGCCGTTGGATTTAATAAATTGCGAAAAGAGGAAAACTTTGTGGCTAAATCGGTGCTATAGAGAAAATAAGAGCGTATGTAATTGA 924 0.46 MAPSAEYNGNSSTSESQRSTPTPFLTKTYHLVDDRTINDVISWNDTGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNECFRRGEKHLLSDIQRRKIVSASPVPASNATVAVPTGNTIVSPSVSGEEQVISSNSSPSISPAEILDENEKLRKENMQLTKEIEDIKSLHNNIFNLLSNYAKSQSEGGAQGKECCSTAAATLPLLPENRCDGEVEAAVMAMKDINPKLFGVAIGTKRARKEERCVEDNTVLSLDQPVYADVKSKPLDLINCEKRKTLWLNRCYRENKSVCN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05440 307 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 199 IPR027725 -
Trre1g05440 307 Gene3D - 16 114 IPR036388 -
Trre1g05440 307 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05440 307 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05440 307 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g05440 307 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05440 307 FunFam Heat stress transcription factor B-4 16 114 - -
Trre1g05440 307 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Trre1g05440 307 Coils Coil 165 185 - -
Trre1g05440 307 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05440 307 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre1g05440 307 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05440 Trre-Chr1 59953334 59954356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05440 14 307 HSF AT5G62020 45.938 2.54e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre1g05440 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05440 K09419 - gmx:100780987 364.77