Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05434 ATGGTTAACTCCACAAGACACATGAATTTGAGTCTCATCATCATCATCTTCTTCTTCATCCTCCTTGTTACCAATGATACTGCAAAAGCACAATCAACAATACAACCAGCATCTCCTATGGCCTCACCAACAATCTTATGGGATGTGTCTTCTATTGCTGTAATTGTTGGAGCAATCATTGCTACACTCATCTTAATTTTCATCTTCTCATTGTTCCTGCGCCGCGTCACAAACCCATCAATGGCAGAGTTAACAAAACGTGAACTTAGCATTGGTATCAACCCTCAAATTCTCAAAAGTTTCCCAATTTTATTATACTCATCCATCATCAACCATCTTAAGGAAAGTGAAACTGAAGCTCCTCTACCATGTGCTGTTTGTCTTTCTGATTTCAACAACAATGATACAATTCGTATGTTACCTCAATGTAACCATTTTTTTCATCCACCATGTATTGATGCTTGGCTTTCTAACCATCCTACTTGTCCTGTTTGTCGTCTCAATCTCAATCATCAATGTTCATGTCATTTTGCCATTTCTATCGACACACAAGTCAACGGTGAACGTCGAAATGAAAGCGTATAA 585 0.3829 MVNSTRHMNLSLIIIIFFFILLVTNDTAKAQSTIQPASPMASPTILWDVSSIAVIVGAIIATLILIFIFSLFLRRVTNPSMAELTKRELSIGINPQILKSFPILLYSSIINHLKESETEAPLPCAVCLSDFNNNDTIRMLPQCNHFFHPPCIDAWLSNHPTCPVCRLNLNHQCSCHFAISIDTQVNGERRNESV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05434 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
Trre1g05434 194 FunFam E3 ubiquitin-protein ligase ATL6 81 172 - -
Trre1g05434 194 Pfam Ring finger domain 124 166 IPR001841 -
Trre1g05434 194 CDD RING-H2_EL5-like 124 166 - -
Trre1g05434 194 SMART ring_2 124 165 IPR001841 -
Trre1g05434 194 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Trre1g05434 194 PANTHER RING FINGER DOMAIN-CONTAINING 28 169 - -
Trre1g05434 194 SUPERFAMILY RING/U-box 123 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05434 Trre-Chr1 59918416 59919000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05434 2 174 Rapid Response to Elicitors AT3G05200 35.135 1.66e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05434 K10664 - aprc:113871817 130.954