Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05423 ATGGGATTCCAACAATTAGAAAAGACAAAACCAAAACATAGGAAGGGTTTATGGTCCCCTGAAGAAGATCATAATCTTAGAAACTACATCCTTAAACATGGTCATGGATGCTGGAGCTCTGTCCCTATTAAAGCAGGCTTGCAAAGGAATGGGAAGAGTTGCAGATTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAAGAGGAGGAGACAATCCTGACCCTTCATCACATCTTAGGCAACAAGTGGTCACAAATAGCACAACATTTACCAGGAAGGACAGACAATGAGATAAAAAATTATTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCTATGGAAATGGAATCTCATAAACAAATTCACCATGCTAGCTCAAGCTCAGATACATTGAATTCTTCACCCTCTCTTCAAAATCATGCAACTCAAGATCCACAAAATTACAACATTACCAAAGAGATTCATCAAAGTTCCTTACCAAAATTGTTGTTTGCTGAATGGCTTTCACTTGATCAAGTAAATGGTAGGAACTCTACAAATAATTCAGTTGATTCTTTGGTCATGAAAAATGGATTTGATCAAAATTCAGCTTTTCAAGTAGGTACAATGCAAGAGGGACCCTTCAATGGAGAGTATCATCATAGTATGTTCAATTCACATGTTAAATTTCCAAATCAAATGGTGGGAAATGGATTTGTCCATTGCATACCTGAGGTTGATTTAAGTAATAATTTCAATCTAAGCAATGATGCAATGTATGCATGA 789 0.3663 MGFQQLEKTKPKHRKGLWSPEEDHNLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHILGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVAKAMEMESHKQIHHASSSSDTLNSSPSLQNHATQDPQNYNITKEIHQSSLPKLLFAEWLSLDQVNGRNSTNNSVDSLVMKNGFDQNSAFQVGTMQEGPFNGEYHHSMFNSHVKFPNQMVGNGFVHCIPEVDLSNNFNLSNDAMYA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05423 262 SMART sant 67 115 IPR001005 -
Trre1g05423 262 SMART sant 14 64 IPR001005 -
Trre1g05423 262 Gene3D - 15 67 - -
Trre1g05423 262 CDD SANT 18 62 IPR001005 -
Trre1g05423 262 PANTHER MYB DOMAIN PROTEIN 55 6 219 - -
Trre1g05423 262 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre1g05423 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre1g05423 262 MobiDBLite consensus disorder prediction 123 153 - -
Trre1g05423 262 Gene3D - 69 141 - -
Trre1g05423 262 FunFam MYB transcription factor 70 141 - -
Trre1g05423 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre1g05423 262 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre1g05423 262 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre1g05423 262 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre1g05423 262 MobiDBLite consensus disorder prediction 132 153 - -
Trre1g05423 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre1g05423 262 FunFam MYB transcription factor 12 68 - -
Trre1g05423 262 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05423 Trre-Chr1 59833791 59835645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05423 8 176 MYB Transcription Factor Family AT3G48920 56.395 1.22e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g05423 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05423 K09422 - gmx:778167 405.601