Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05417 ATGGCTTTGGGCGTAGGTGCTGTTCCGTTCACTTACGTTGCTCACGTTCTTGGTATTACCGCAATCGTATTGGTCTTCGTTTGGAACATACATTTCAGAGGCGGTTTGGCTTGGAGTTCTGACAACAAAGCTCTCATCTTCAATCTTCATCCTGTTCTTATGCTTACTGGCTTAATAGTATTTGGAGGCGAAGCCATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTGAAGAAATTGATACACCTTGGTCTCCACGCGATTGCATTAATACTTGGAAGTGTTGGAATTGCTGCTGCATTCAAGAATCACAATGAAAGTGGGATTGCCAATCTGTACAGCTTGCATTCATGGCTTGGAATTGGTGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGATTTGTGGTATTTTTCTACCCTGGTGGGAGTTCGGAGTTAAGACGCGAGTCAGTTCCATGGCACGTACTATTTGGGCTGTTTGTGTATATTTTAGCTCTTGCCACTTCTTCTCTTGGGTTTCTGGAAAAACTCACATTCCTGGAGAGTTCAGGATTGCCAAAATATGGTTCTGAAGCTTTACTTGTTAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGTTGTATTATCTGCCATATCTCAAGCTCCACCAGCTGCTGATGACTATGCACCAATATAG 690 0.413 MALGVGAVPFTYVAHVLGITAIVLVFVWNIHFRGGLAWSSDNKALIFNLHPVLMLTGLIVFGGEAIISYKSLPLKKEVKKLIHLGLHAIALILGSVGIAAAFKNHNESGIANLYSLHSWLGIGVISLYGIQWIFGFVVFFYPGGSSELRRESVPWHVLFGLFVYILALATSSLGFLEKLTFLESSGLPKYGSEALLVNFNAIITILFGTFVVLSAISQAPPAADDYAPI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05417 229 Pfam Eukaryotic cytochrome b561 49 181 IPR006593 -
Trre1g05417 229 FunFam Cytochrome b reductase 1 5 224 - -
Trre1g05417 229 CDD Cyt_b561_ACYB-1_like 40 183 - -
Trre1g05417 229 SMART 561_7 49 175 IPR006593 -
Trre1g05417 229 Gene3D - 3 224 - -
Trre1g05417 229 ProSiteProfiles Cytochrome b561 domain profile. 13 216 IPR006593 -
Trre1g05417 229 PANTHER CYTOCHROME B561-RELATED 1 217 IPR043205 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05417 Trre-Chr1 59789224 59793076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05417 1 218 Chloroplast and Mitochondria Gene Families AT4G25570 68.349 2.73e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05417 K08360 - gmx:100306179 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05417 1 59789224 59793076 Trre1g05417 1 59789224 59793076 ECH