Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05390 ATGTTTGCAACACTTTGCTTCATATTGTTATTGATACTAACAATTTCTTGGTGGATTTTACCTATCCAAGTACAAAAGAAGCTTAAAAGAAATGGTTTTGGAGGGCCAACTCCAAGCTTTCCACTTGGAAATATTAAAGAGATGAAAAGAAAGAATAGCAATATTCAATCTTTAGTTGCATCTTCAAATCCCACAAATGATATTCACTCACAAGTTTTTCCTTACTTTTCTTCTTGGACAAAATCACATGGTAAGGTGTTTGTGTATTGGCTAGGGACAGAACCATTTTTGTACATTGCGGATGCAGAATTCTTGAAGAAAATGTCAACAGAAGTGATGGCAAAGAAATGGGGAAAACCTAGTGTTTTTAGAAATGATAGAGATCCAATGTTTGGAAGTGGTTTGGTGATGGTGGAAGGGAATGATTGGGTACGTCATAGACACATTGTTGCACCAGCATTCAACCCTCTTAATCTCAAGGTGATGGCAAGTATGATGATTGAGTCTACAAATCAAATGATAGATAGATGGACAAGCCAAATAAACTTTGGCAACCTTGAAATTGATGTGGAAAAAGAAATTATAACAATTGCCGGAGAGATTATAGCAAAAACAAGTTTTGGTGTGGAAGATGAAAATGCTAAAGAAGTGTTTAACAAATTAAGAGCCTTACAAATGACTCTTTTTAACACTAATAGATATGTAGGGGTTCCCTTTGGAAAGTACTTTAATGTCAAGAAAAATCAAGAGGCCAAAAAACTTGGCAAAGAAATTGATAAGCTCTTATTGACAATTGTAGAAGCTAGGAAAAATTCACTTAAAAAGAACTCTCAAAAAGACTTATTAGGGTTATTGCTACAAGAAAATAATAATGATGGCCGATTAGGAAAGACACTATCATCAAGAGAAGTAGTTGATGAATGCAAGACTTTCTTCTTTGGTGGACATGAAACAACAGCACTTGCTATCACATGGACTTTGATGCTTCTAGCCACACATGAAGATTGGCAAAATCAATTAAGAGAAGAGATAAAAGAAGTTGTGGGAAATAATGAGCTTGATATCACTATGCTTGCTGGTTTAAAAAAGATGAAGTGGGTGATGAATGAAGTTCTAAGACTATATCCACCAGCACCAAATGTGCAAAGACAAGCAAGAGAAGATATTCAAGTTGACGATGTAACGGTGCCCAACGGAACAAATATGTGGATCGATGTAGTAGCGATGCACCACGATCCTGAATTATGGGGTGAAGATGTGAATGAGTTCAAACCAGAGAGGTTCATGGATGATGTGAATGGTGGATGCAAACACAAGATGGGATATTTACCTTTTGGATTTGGAGGGAGGATGTGTGTGGGTAGAAACTTGACATTTATGGAGTATAAGATAGTATTAACAAGACTTCTCTCTAACTTCACTTTTAAAGTTTCACCAAATTATCATCATTCACCAGCCATTATGCTCTCCCTAAGGCCCACTCATGGACTTCAACTCATTGTTCAACCCCTTAATTAG 1518 0.3636 MFATLCFILLLILTISWWILPIQVQKKLKRNGFGGPTPSFPLGNIKEMKRKNSNIQSLVASSNPTNDIHSQVFPYFSSWTKSHGKVFVYWLGTEPFLYIADAEFLKKMSTEVMAKKWGKPSVFRNDRDPMFGSGLVMVEGNDWVRHRHIVAPAFNPLNLKVMASMMIESTNQMIDRWTSQINFGNLEIDVEKEIITIAGEIIAKTSFGVEDENAKEVFNKLRALQMTLFNTNRYVGVPFGKYFNVKKNQEAKKLGKEIDKLLLTIVEARKNSLKKNSQKDLLGLLLQENNNDGRLGKTLSSREVVDECKTFFFGGHETTALAITWTLMLLATHEDWQNQLREEIKEVVGNNELDITMLAGLKKMKWVMNEVLRLYPPAPNVQRQAREDIQVDDVTVPNGTNMWIDVVAMHHDPELWGEDVNEFKPERFMDDVNGGCKHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTRLLSNFTFKVSPNYHHSPAIMLSLRPTHGLQLIVQPLN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05390 505 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 Pfam Cytochrome P450 71 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 Coils Coil 251 271 - -
Trre1g05390 505 Gene3D Cytochrome P450 18 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre1g05390 505 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g05390 505 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 496 - -
Trre1g05390 505 SUPERFAMILY Cytochrome P450 69 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05390 Trre-Chr1 59572622 59577011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05390 1 504 Cytochrome P450 AT5G52400 59.725 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05390 - - gmx:100785284 850.892