Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05385 ATGAACTTCGCGGCCATGGCTATGGCATTATTATATCTAACCACGGTGGAGCCATGGCGCGTTAATTCAGAAGAACAACAGAAGCTTATGGTGAACATGACACTCGTTACAAATGCACGTGAAACTAGTGCTTTTTGTTTGGATGGGAGTTTACCGGCGTATCATTTGCACAAAGGACATGGAACAGGGAAAAACAATTGGCTTCTACAATTCGAGGGTGGTGGATGGTGCAATGACCTTACATCATGCTTAGAGAGAGCACAAACTCGTAGGGGTTCATCACATTATATGACTAAGTGGGAGGTCTTTTCTGGTATTTTAAGCAACAATGCTACCCTTAATCCAGACTTTTACAATTGGAATAGGGTGAAGCTAAGATACTGTGATGGAGCTTCATTTACTGGAAACAAAGTGTTCAATAATGAGACAACAAAGCTTTACTTCAAAGGCCAAAAGATTTGGGAAGCCATTATTCATGACCTTCTACCAAAAGGTTTAGAAAAGGCACATAAGGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCCACTTTTCATCATTGTGACAACTTCACCAAGTATTTGCCAACAACTGCTAGTGTTAAATGCATGAGTGATGCAGGCTTTTTTCTTGATGAAAAAGATATCAGTTCTAACTACACTATGAGAAACTTCTTCAAAAATGTAGTAACATTGCAGGCGGTAGAGCGGAATCTAAATAGAAATTGTACCAAAGAGTTGTCCTCTTCTGCATACTTGTGCTTCTTTCCGCAGTATGTATTGAAATATATATCAACACCATATTTTATCTTGAACCCTGCCTATGATGTATACCAATTCAGTAATGTATTGGTGACACCTTCATCCGATCCCCACGGACAATGGAACCACTGCAAGCATAACCTATCGACATGTACACCAGCCGAAATTGATACATTGCAAGGTTTTAGGCTCAGCATGATTAATGTTTTGAAACCATTCAACTTATATTCAAACAACGGCGGAATGTTCATAAATTCGTGTTTTGCTCATTGCCAAAGTGAAATGCAAGAAACATGGTTTGGAGCTTATTCTCCAAGAATAAACAATAAGACTATTGCAAAAGCAGTTGGTGATTGGTATTTTAGTAGAAACATAATCCAGGAAATAGATTGTGCATATCCATGTGACAAAACTTGTCATAATTTGATACCATCATAA 1200 0.3867 MNFAAMAMALLYLTTVEPWRVNSEEQQKLMVNMTLVTNARETSAFCLDGSLPAYHLHKGHGTGKNNWLLQFEGGGWCNDLTSCLERAQTRRGSSHYMTKWEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNKVFNNETTKLYFKGQKIWEAIIHDLLPKGLEKAHKALLSGCSAGGLATFHHCDNFTKYLPTTASVKCMSDAGFFLDEKDISSNYTMRNFFKNVVTLQAVERNLNRNCTKELSSSAYLCFFPQYVLKYISTPYFILNPAYDVYQFSNVLVTPSSDPHGQWNHCKHNLSTCTPAEIDTLQGFRLSMINVLKPFNLYSNNGGMFINSCFAHCQSEMQETWFGAYSPRINNKTIAKAVGDWYFSRNIIQEIDCAYPCDKTCHNLIPS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05385 399 PANTHER NOTUM-RELATED 14 395 IPR004963 GO:0016787
Trre1g05385 399 Pfam Pectinacetylesterase 25 378 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05385 Trre-Chr1 59548120 59552576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05385 7 399 Carbohydrate Esterase AT5G23870 62.690 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05385 K19882 - gmx:100802358 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05385 1 59548120 59552576 Trre1g05385 1 59548120 59552576 ECH