Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05384 ATGATTCCATTGTTTTCTCTTACGATGAACTTCGCGGCCATGGCTATGGCATTATTATATCTAACCACGGTGGAGCCATGGCGCGTTAATTCAGAAGAACAACAGAAGCTTATGGTGAACATGACACTCGTTACAAATGCACGTGAAACTAGTGCTTTTTGTTTGGATGGGAGTTTACCGGCGTATCATTTGCACAAAGGACATGGAACAGGGAAAAACAATTGGCTTCTACAATTCGAGGGTGGTGGATGGTGCAATGACCTTACATCATGCTTAGAGAGAGCACAAACTCGTAGGGGTTCATCACATTATATGACTAAGTGGGAGGTCTTTTCTGGTATTTTAAGCAACAATGCTACCCTTAATCCAGACTTTTACAATTGGAATAGGGTGAAGCTAAGATACTGTGATGGAGCTTCATTTACTGGAAACAAAGTGTTCAATAATGAGACAACAAAGCTTTACTTCAAAGGCCAAAAGATTTGGGAAGCCATTATTCATGACCTTCTACCAAAAGGTTTAGAAAAGGCACATAAGGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCCACTTTTCATCATTGTGACAACTTCACCAAGTATTTGCCAACAACTGCTAGTGTTAAATGCATGAGTGATGCAGGCTTTTTTCTTGATGAAAAAGATATCAGTTCTAACTACACTATGAGAAACTTCTTCAAAAATGTAGTAACATTGCAGGCGGTAGAGCGGAATCTAAATAGAAATTGTACCAAAGAGTTGTCCTCTTCTGCATACTTGTGCTTCTTTCCGCAGTATGTATTGAAATATATATCAACACCATATTTTATCTTGAACCCTGCCTATGATGTATACCAATTCAGTAATGTATTGGTGACACCTTCATCCGATCCCCACGGACAATGGAACCACTGCAAGCATAACCTATCGACATGTACACCAGCCGAAATTGATACATTGCAAGGTTTTAGGCTCAGCATGATTAATGTTTTGAAACCATTCAACTTATATTCAAACAACGGCGGAATGTTCATAAATTCGTGTTTTGCTCATTGCCAAAGTGAAATGCAAGAAACATGGTTTGGAGCTTATTCTCCAAGAATAAACAATAAGACTATTGCAAAAGCAGTTGGTGATTGGTATTTTAGTAGAAACATAATCCAGGAAATAGATTGTGCATATCCATGTGACAAAACTTGTCATAATTTGATACCATCATAA 1224 0.3856 MIPLFSLTMNFAAMAMALLYLTTVEPWRVNSEEQQKLMVNMTLVTNARETSAFCLDGSLPAYHLHKGHGTGKNNWLLQFEGGGWCNDLTSCLERAQTRRGSSHYMTKWEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNKVFNNETTKLYFKGQKIWEAIIHDLLPKGLEKAHKALLSGCSAGGLATFHHCDNFTKYLPTTASVKCMSDAGFFLDEKDISSNYTMRNFFKNVVTLQAVERNLNRNCTKELSSSAYLCFFPQYVLKYISTPYFILNPAYDVYQFSNVLVTPSSDPHGQWNHCKHNLSTCTPAEIDTLQGFRLSMINVLKPFNLYSNNGGMFINSCFAHCQSEMQETWFGAYSPRINNKTIAKAVGDWYFSRNIIQEIDCAYPCDKTCHNLIPS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05384 407 Pfam Pectinacetylesterase 33 386 IPR004963 GO:0016787
Trre1g05384 407 PANTHER NOTUM-RELATED 17 403 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05384 Trre-Chr1 59548096 59552576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05384 15 407 Carbohydrate Esterase AT5G23870 62.690 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05384 K19882 - gmx:100802358 642.884