Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05383 ATGATTCCGTTCATATTTCTGAAGAAGATGAAGTTTGTTGTGGCTTTGGCATTATTGTGTATAATCACGGTGGAGCCATGGTGTGTTAACTCAGAACAGAGGCTTCTGGTGAACATGACGCTCGTTGCCAACGCACGTGATACTGGTGCTCTTTGTTTGGATGGAAGTTTACCGGCGTATCATTTGGACAGAGGATATGGAGCGGGTCAAAACAATTGGCTTCTACAATTCGAGGGAGGTGGGTGGTGCAATGACTTGCCATCATGCTTGGAGAGAGCACAAACTCGCAGGGGTTCTACACGTTATATGACTAAGTGGGAGGTCTTCTCTGGTATATTAAGCAATAATGCCACCCTTAATCCAGACTTTTATAATTGGAATAGGGTGAAGCTGAGATACTGTGATGGAGCTTCATTTACTGGAAACAGATTGTTCAATAATGGGACAACAAAGCTTTACTTTAAAGGGCAAAAGATTTGGGAAGCCATTATTGGCGACCTTCTACCCAAAGGTTTAGGAAAGGCACACAAGGCTTTGCTTTCAGGCTGTTCAGCAGGAGGTTTAGCCACCTTTCATCATTGTGACAACTTCACCAAGTATTTGCCAATTAATGCTAGTGTTAAATGTTTGAGTGATGCAGGTTTTTTCCTTGATGGAAGAGATATCAGTTTGAACCACACTATGAGGTACTTTGTCAAAAGTCTAGTTACATTGCAGGGGATAGAACAAAACCTTAATAAAAACTGCACCAATGCGTTGTCCTATCCAGACTTGTGTTTCTTTCCACAATATGTGTTGAAATATATATCAACACCATATTTTATCTTGAACTCCGCCTATGATGTATTCCAATTCCATCATATATTGGTGCCACCTTCAGCTGACCCCCGCGGGCACTGGAACCACTGTAAGCTGAACCCAGCAGCTTGCACACCAGACCAAATTGATACATTGCAAGGGTTTAGGCTCAGCATGACTGCAACTTTGAAGCCCTTCTACTTTTATTCAAATAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCACTGCCAAAGTGAATTGCAAGAAACATGGTTTGGAGCCGATTCTCCAAGAATAAACGACAAGACTATTGCAGAAGCAGTTGGTGATTGGTATTTTAGTAGAAACAGAAGTAAAGAAATAGACTGTGCATATCCATGTGATAAAACTTGTCATAATTTGATACCATAA 1212 0.4125 MIPFIFLKKMKFVVALALLCIITVEPWCVNSEQRLLVNMTLVANARDTGALCLDGSLPAYHLDRGYGAGQNNWLLQFEGGGWCNDLPSCLERAQTRRGSTRYMTKWEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGNRLFNNGTTKLYFKGQKIWEAIIGDLLPKGLGKAHKALLSGCSAGGLATFHHCDNFTKYLPINASVKCLSDAGFFLDGRDISLNHTMRYFVKSLVTLQGIEQNLNKNCTNALSYPDLCFFPQYVLKYISTPYFILNSAYDVFQFHHILVPPSADPRGHWNHCKLNPAACTPDQIDTLQGFRLSMTATLKPFYFYSNRGGMFINSCFAHCQSELQETWFGADSPRINDKTIAEAVGDWYFSRNRSKEIDCAYPCDKTCHNLIP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05383 403 PANTHER NOTUM-RELATED 16 400 IPR004963 GO:0016787
Trre1g05383 403 Pfam Pectinacetylesterase 31 383 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05383 Trre-Chr1 59531844 59540722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05383 8 403 Carbohydrate Esterase AT5G23870 67.588 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05383 K19882 - gmx:100802358 697.967