Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05381 ATGCCAGAATCTGAGGAAGATAATCAAGACTTTCCTCCCAAGACAAAAACATCCTTAGAGGAACATGTTTGTGCTATGGATTTTGATCTTGATTTGGAAACTTCATGGCCTTTGGATCACATGTCTTTTATCTCAAATCCCATGTCACCTTTTCTGTTTTCCACCATACCTGATCAACCTTCATCTCCTTTATGGACTTTTACTGATGGAGAAGATGAAAATCATGCCAAGTTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCGATGGAGAAAGATGAAAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGATAATTTGGATAGATATTGTGGAATCAAGGAAAAGATGACACAAGCGCTTCGCTACTTCAAAGAATGGACTGAAATGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTTTGTACTTACAACTTCAGGTCAGCCTTTTGTGCTAGATCCGCATAGTAACGGACTCAATCAGTATAGAACAGTCTCCCTGATGTATAAGTTTTCTGTGGATGGAGAGAACGATGGAACTCTTGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCTAATGTTCTGTACTATTCTAGTAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGGGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCCGTCATGTATCGGTGTGCTAGAACTGATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAGAATGCACTATCCGAGATCTTGGAGATATTGACGGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCAACAACCGAGGTAGCATCCTACATCATAGATGCTCATTTATGGGGTTTCAGGGAGGCCTGTGTCGAGCATCACTTACAACATGGTCAAGGTGTTGCAGGGAGGGCTTTTTTGTCTCAAAACATGAGCTTCTGCTCAAACATTACACAGTTCTGCAAAACAGATTACCCTTTGGTTCATTATGCCCTCATGTTCGGGTTAACAGGCTGTTTTGCGATCTGTTTGCGGAGTTTTTATACAGGAGATGATGATTATGTGTTAGAGTTTTTTTTGCCTCCGGGGATCACAGAATTTCATGAACAGAAGACGCTCTTGGGATCCATATTGGCAACAATGAAAGAACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACAGATGAAGGCGTTTGTCTTAGAACTGAATATATTCCAATTGCTCAATCTATTAAATCGCCACTTATACCTGATGCCTCACCAAATATGGAGGAGCTACCACAGGATGATCCATCAGCGATTCATGGTGAAGACGTAGGTGGAAGCATCGATCCAATGTCCTCCTTAGGAAACAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTACAACGGTATTTTGCCGGGAGTCTTAAAGATGCTGCAAAAAGCCTTGGCGTTTGCCCTACTACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCGTTTGATTTGAATTCCCTCGGTAATAATCAACTACCAATTGTTAGTTCTTTTCCTGAGCCTTCTACTCCGAATAAGTCCAACCAGCAAGGGTCGTTAAGCATCAAGCCATCAGAGCCTCAGATGAAAGAGAATGAGTTTGACGCCTCTAAATTATCAGAAACAAACATAAAAGTTGTAATGGAAGATCAATTACTAGGAGGAAGGAAACATAGTCTTGATAAAGAAGTGATTAATGATAAAGGTGTGTCTATTCGGGAAATTGGGAAGGACCGAAAAAGGACTAGAACTAGGAGTGGCTCAAGCGAAGATAGCACAAATCCGGCTTCTCATGGTTCATGTCATGGTAGTCCACCAAATGAAATTTCTACTGTAAGAGATCTATTCATTCCATCCAACAATGAGCAATGTGTTGTGTTGAGGGGATCACCAGAGTCGAGAGTGCAGCCAACTAATGCATTCAACTCTCCAACTGCTCACTGTTTGCCTGACAACGTGCTAGCAGAACTTCAAGAGCCATTCGGAGGAATGCTAATAGAGGACGCTGGAAGTTCAAAAGACTTAAGAAATTTGTGTCCTTCGGTAGCTGAGGCCATTTTGGAAGATATGGCTCCAGAAGCTTGTGGAACTAATCTTCCAGGTTCATATATGGCTCCTCCTAAACAATGCATGGATACTATTAATAATAATAATTCAGTGATGCCTTTTGCAGTTAGAAAAGAAATGAAAACTGTGACAATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTTGAATTGAAAGAAGAAGTTTCCAAAAGATTGAAACTAGAGGTTGGTACATTTGATATCAAGTACATGGATGATGATAACGAATGGGTTTTGATAGCATGTGACGCAGATCTTCAGGAGTGCATGTATGTTTCAAGATCATCCGGAGGTAGCAACATAATCCGGGTTTTGGTGCATGACATAACGTCGAATCTTGGAAGCTCTTGTGAGAGCTCAGGGGAGTGA 2943 0.4159 MPESEEDNQDFPPKTKTSLEEHVCAMDFDLDLETSWPLDHMSFISNPMSPFLFSTIPDQPSSPLWTFTDGEDENHAKFAASAFSDCHKIFSCDSNSITEKPMEKDENKTLLPPLLPPIDNLDRYCGIKEKMTQALRYFKEWTEMNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLNQYRTVSLMYKFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLPSCIGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVASYIIDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCSNITQFCKTDYPLVHYALMFGLTGCFAICLRSFYTGDDDYVLEFFLPPGITEFHEQKTLLGSILATMKEHFQSLKIAAGVELEENGSIEIIEATDEGVCLRTEYIPIAQSIKSPLIPDASPNMEELPQDDPSAIHGEDVGGSIDPMSSLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSNQQGSLSIKPSEPQMKENEFDASKLSETNIKVVMEDQLLGGRKHSLDKEVINDKGVSIREIGKDRKRTRTRSGSSEDSTNPASHGSCHGSPPNEISTVRDLFIPSNNEQCVVLRGSPESRVQPTNAFNSPTAHCLPDNVLAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMAPEACGTNLPGSYMAPPKQCMDTINNNNSVMPFAVRKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05381 980 PANTHER PROTEIN NLP8 59 979 IPR045012 GO:0003700
Trre1g05381 980 CDD PB1_NLP 885 966 IPR034891 -
Trre1g05381 980 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Trre1g05381 980 MobiDBLite consensus disorder prediction 724 764 - -
Trre1g05381 980 Gene3D - 881 964 - -
Trre1g05381 980 MobiDBLite consensus disorder prediction 653 690 - -
Trre1g05381 980 ProSiteProfiles PB1 domain profile. 884 967 IPR000270 GO:0005515
Trre1g05381 980 Pfam PB1 domain 884 966 IPR000270 GO:0005515
Trre1g05381 980 MobiDBLite consensus disorder prediction 741 764 - -
Trre1g05381 980 SMART PB1_new 884 967 IPR000270 GO:0005515
Trre1g05381 980 Pfam RWP-RK domain 573 621 IPR003035 -
Trre1g05381 980 SUPERFAMILY CAD & PB1 domains 882 970 - -
Trre1g05381 980 MobiDBLite consensus disorder prediction 524 571 - -
Trre1g05381 980 MobiDBLite consensus disorder prediction 653 679 - -
Trre1g05381 980 MobiDBLite consensus disorder prediction 724 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05381 Trre-Chr1 59512470 59516722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05381 261 980 NLP Transcription Factor Family AT4G24020 53.576 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre1g05381 PB1 1.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05381 - - gmx:100786118 1523.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01404 11 13707683 13712382 Trre1g05381 1 59512470 59516722 PCT