Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05380 ATGGCTCCTAAACAACCAAGTACCGGTGTCTTCGTTGGATTGAACAAAGGTCACATCGTCACCAAGAAGGAATTACCTCTTAAACCTTCAGCTCGCAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAATCTCATTAGAGAGGTTGCTGGTTTTGCACCTTATGAGAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAAGATAAGAGGGCTTTGAAGGTTGCAAAGAGAAAGCTTGGAACACACAAGCGTGCAAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCAGGAAGATGAGAGCTGGTGGAGCCGGAGATAAGAAGAAATAA 333 0.4505 MAPKQPSTGVFVGLNKGHIVTKKELPLKPSARKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05380 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Trre1g05380 110 MobiDBLite consensus disorder prediction 79 110 - -
Trre1g05380 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trre1g05380 110 MobiDBLite consensus disorder prediction 87 110 - -
Trre1g05380 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 108 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trre1g05380 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Trre1g05380 110 FunFam 60S ribosomal protein L36 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05380 Trre-Chr1 59502781 59503702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05380 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 80.769 1.69e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05380 K02920 - gmx:100526979 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05380 1 59502781 59503702 Trre1g05380 1 59502781 59503702 ECH