Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05375 ATGGGTACCATCCAAGAACAAGTATCAGTTGCAGAAGAGCGACTCGAGGGTGTACAAAACGACACCGTTTACGTTGCTGTGGGAAACAACGCGGAGAAGAACCATAAACTATTGCATTGGGTAATTCACAATTTCTCAGGGAAGAAAATTTGCCTCCTTCATATTCATCAACCCGACCTTATCAATTCATTGAACACAAATGTATCTGAATATGAACCTAAAGACCATGCAATCAAGACATTCAAGGAGCATGGTAGTAAAAGAGTGCATGAATTCCTAGACCAGTACATCCTCACTCTGGTCCCAGCAGGGGTACAGGCCTCTAAATTGTTGATTGAGAAGGACAGTATTGAGAAAGGGATCAAAGAAGCTATTTTTCAACACAACATTAGATGTCTTGTAATGGGAGCGGCTACTGACAGACAGAAGACGGGGTTAGATAGTGAAGACACACCTGGAATAGAGACTACCCCTGTTTTGTTGATGCTCGACTCAGATACAGAAGCCAAACAATCTGAAAAAATTAAATCAGAATTGATTCCTAATGTATTGAAATATTTAGATTCTAGTGATATGGAAGAGACTGAAAACGTTATTGCAAGGACAAAGTTGGCAGATTTGCTTATTCATGAGGATGACGAAGCATTACAAAACTGGCATGCTAAGGAGATAAGTAGGAGAAAAGATGTTGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACTAGAAATGAAGAATCAGCGAGATAAAATAATATGTGAATTGCAAATGGTCCAAGACCAAATTTCAGCTCTTAGAAACCAATTGTTTGAGTCCAAGTGTACAGCAACTGAGTTGGAAGAGAAGATTCTATCTGCTGTGGGCCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGATAGAACATGCAAGTGCAGTTAGGAAAGTCCAAGTGCTGACAAAAATTGGAGAAGCGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGCCAGAGCCAATCGGAGTTCCAGCATCAGGTGGAAGTTTTAAGTAGAGCAAGGCATCCAAATCTTCTAACACTAATTGGAAGCTGTGCAGAGTATAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTAGAAAGCCATCTTGCCTGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCTATTGCTACTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCACGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTGGGGATTCCTTCTTTAGTCCAAGATAGTGTGGATTCAGCCGACACAAGCCCAGTAGTATGTAACAACTCGCATGAAAATTTGGCATACGTGGATCCAGAGTATCTTGACACTGGTAAACTTACACCAGAATCAGATGTGTATTCATTTGGAATCATACTGTTACAACTTTTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAGATGTGCATTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTGTCAGCTGGTGAATGGCCACTTTATCAAACCACACAACTGGCATATTTAGCATTGAGGTGTTGTGAGAAAACTTGGTTGAACCGGCCAGATCTTGTGTCAGAAGTCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCATTTTGTCTGTCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGAGGATGGTTGGACAGTGGTCACGACACTTCCCCTATGACAAACCTCACACTTGAACACACAGATTTGGTACCTAATTATGCACTACATAATGCCATTCGAGAGTGGCAGCAACAGTGA 2097 0.4092 MGTIQEQVSVAEERLEGVQNDTVYVAVGNNAEKNHKLLHWVIHNFSGKKICLLHIHQPDLINSLNTNVSEYEPKDHAIKTFKEHGSKRVHEFLDQYILTLVPAGVQASKLLIEKDSIEKGIKEAIFQHNIRCLVMGAATDRQKTGLDSEDTPGIETTPVLLMLDSDTEAKQSEKIKSELIPNVLKYLDSSDMEETENVIARTKLADLLIHEDDEALQNWHAKEISRRKDVEEQLAREKQDVLEMKNQRDKIICELQMVQDQISALRNQLFESKCTATELEEKILSAVGLLISFKEKRDKLRIEHASAVRKVQVLTKIGEADTTSSYVVEFPAFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSQSEFQHQVEVLSRARHPNLLTLIGSCAEYKSLVYEYLNNGSLESHLACKDKTPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQDSVDSADTSPVVCNNSHENLAYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLSGLVRDMRCALEKENLKTVLDLSAGEWPLYQTTQLAYLALRCCEKTWLNRPDLVSEVWSVLKPFRTICIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHDTSPMTNLTLEHTDLVPNYALHNAIREWQQQ 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05375 698 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Trre1g05375 698 SMART Ubox_2 632 695 IPR003613 GO:0004842|GO:0016567
Trre1g05375 698 Coils Coil 220 282 - -
Trre1g05375 698 ProSiteProfiles Protein kinase domain profile. 345 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05375 698 SUPERFAMILY RING/U-box 626 698 - -
Trre1g05375 698 ProSiteProfiles U-box domain profile. 628 698 IPR003613 GO:0004842|GO:0016567
Trre1g05375 698 Coils Coil 1 21 - -
Trre1g05375 698 CDD RING-Ubox_WDSUB1-like 630 685 - -
Trre1g05375 698 SUPERFAMILY Protein kinase-like (PK-like) 321 599 IPR011009 -
Trre1g05375 698 PANTHER OS02G0152300 PROTEIN 23 152 - -
Trre1g05375 698 Gene3D Transferase(Phosphotransferase) domain 1 418 613 - -
Trre1g05375 698 Pfam Protein tyrosine and serine/threonine kinase 350 599 IPR001245 GO:0004672|GO:0006468
Trre1g05375 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 698 IPR013083 -
Trre1g05375 698 Pfam U-box domain 629 697 IPR003613 GO:0004842|GO:0016567
Trre1g05375 698 ProSitePatterns Protein kinases ATP-binding region signature. 351 372 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05375 Trre-Chr1 59473357 59478520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05375 247 698 U-box Gene Family AT3G49060 51.183 4.55e-157 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre1g05375 PK_Tyr_Ser-Thr 9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05375 - - gmx:100799675 1025.77