Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05374 ATGCCAGTTGCAAAACTTACTGCTTCAGGTACTCCCAATTTTATGAAAACAGAAGACAGAAATGATTCTTTGGATACATTAATCAGACAAGCAGTTGGAAAAGAACCTTTCCTTTCGTTTCCTAGAGCTGGTGACAGGCCAGCACAGTGGATTCAGTTATTTCATGCTTTAGAACAGCAACAAGAAATTCCAGGGTGGCCTTTGTTCTCTCCTGCAAAGGTTCAGTTATATAAGTGCGACAAGTGTACTAGAGAGTTTTGCTCACCCATTAATTATAGAAGACATAAACGTGTATACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAGAAAAACAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTATAGAAGAGGCAAAGGAAGCTGTGTCATTTGAGAATGTGACACTAGAGGAGGTTCCAGGGTCTTCAATTTTACAAGCTCTCTCAACTCTTAGAACACAACAAGGATTCTATTCTCTTCCACATAATTATCTCAGAGCTGGCTTTTCCCTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTCCCTATATCTTCCCAGAAGTTGTTCGATATTCTTGATGATTCCAGTGAAAAAACATTTTTATGTGGAACAGCAGTGTCAATGCAAAGACATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCTAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAAAAATTGGTGAAAGCGTGGCTCGCAGACAAAGATGCCGAAGCATTGAGATGCCAGAAGCTGCTGATGGAGGAGGAGGAAGCTGCTCAGAGAAGAAAAGCTGAGATTTTGGAGAGAAAACGCCAGAAAAAACTTAGGCAGAAGGCGAGGAGCCAACTTGAAAATGACACAGAAGTTAAAGGGAGCATCAGCAGCACAGGAGAGGATCTATCACCAGAGGAAGGGGAAGACAGGAGAGCATCTCCGGCTGCATGTGACTTTGAAGCACATAGAGAAGATGTATTTGCAGATCATGCTTCTTCACCACATGTAACTTATCACTTTCTAGACACTAATGAATGTGTTGATGGGGATACACAGTCAGGATACGACTGTGACACTGATCAGAACGTGGAGCCACAAACATCAGAAAGGGATGCTCAGTCAGGTTATGATTGTGACACTGATCGGAATTTAGAAAGACAGACATCACACAGACATAATCCTCGACGCACAGCGGCTGCTAGACGGCAAGGGCTTCCTAAGTCACAACGAACTATTGCCAATGGTTTGTATGCAGGCCAGAACTCTCAAAAGTCAAAGTTTGGAGTCATTCCAAAATATGGAAATGGAACAAACCGTGATCAAAGGGCAGCTCCTATAGTCAATGGTGGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACAGATGCAGTGGTTTTAAAAACCAGACTGCACAAAGAACCAGCCAAAATTAAAAATCATGAGGTTTTGATAGGATCTGTATCAGTTACACTGGCCAATTGCAGCCAATCAGAGTGTTATCTTGTCACATCTCAAGAGGACAGTTTAGTAGAGAATTTGGCCGACCAAAATGTTGCACAGGAGAAGCCAATTAAAACTGACTCCTTTCACGGAGGCAACAATAGGTCAAGAGTTAAGCTTTGGAGACCAGTTAGCCAGCACGGAACTAAAAATCCAATGCCACTTGAAAGTGTTGGGACAGAAGTTGGTGTAGTCTATGGAAATGATGATCAAAATTTGTCAGTTCAAAGTAGTTTAAGGTTGTGTAATATAGATGGAGGTGATATTGGTTCTGGGAACAAATCCCATGTCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAGGAAGCAATTGCATCACATCATGTGGAGTTGGTAATTTCACCTGATTCTGAACCTCCCGGGTTCCAGCCATTCCAGGATTGCGAGCTAGCATCATGCCGATCTTCTAATACGGAGAGATATAGCATTCTTGCAAATACAGAGAACTTGTTGCCTGCAAATACCGGAGTTGCTAAATCCAAACCCAGAGTAAAGCCTGAGAAGGGAATCAAGATAAAGTACATTCCAAAACTAAAAGCTGCAGCATAA 2097 0.422 MPVAKLTASGTPNFMKTEDRNDSLDTLIRQAVGKEPFLSFPRAGDRPAQWIQLFHALEQQQEIPGWPLFSPAKVQLYKCDKCTREFCSPINYRRHKRVYHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEAVSFENVTLEEVPGSSILQALSTLRTQQGFYSLPHNYLRAGFSLLDIVQSRPSSFPISSQKLFDILDDSSEKTFLCGTAVSMQRHVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLMEEEEAAQRRKAEILERKRQKKLRQKARSQLENDTEVKGSISSTGEDLSPEEGEDRRASPAACDFEAHREDVFADHASSPHVTYHFLDTNECVDGDTQSGYDCDTDQNVEPQTSERDAQSGYDCDTDRNLERQTSHRHNPRRTAAARRQGLPKSQRTIANGLYAGQNSQKSKFGVIPKYGNGTNRDQRAAPIVNGGKVWSRKPKPETDAVVLKTRLHKEPAKIKNHEVLIGSVSVTLANCSQSECYLVTSQEDSLVENLADQNVAQEKPIKTDSFHGGNNRSRVKLWRPVSQHGTKNPMPLESVGTEVGVVYGNDDQNLSVQSSLRLCNIDGGDIGSGNKSHVHAAKAFLAQRWKEAIASHHVELVISPDSEPPGFQPFQDCELASCRSSNTERYSILANTENLLPANTGVAKSKPRVKPEKGIKIKYIPKLKAAA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05374 698 MobiDBLite consensus disorder prediction 364 381 - -
Trre1g05374 698 Coils Coil 274 294 - -
Trre1g05374 698 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 696 - -
Trre1g05374 698 MobiDBLite consensus disorder prediction 280 322 - -
Trre1g05374 698 MobiDBLite consensus disorder prediction 280 295 - -
Trre1g05374 698 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 105 IPR013087 -
Trre1g05374 698 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
Trre1g05374 698 MobiDBLite consensus disorder prediction 382 400 - -
Trre1g05374 698 MobiDBLite consensus disorder prediction 364 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05374 Trre-Chr1 59465174 59470683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05374 18 693 C2H2 Transcription Factor Family AT4G25610 40.962 3.28e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g05374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05374 - - psat:127091579 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05374 1 59465174 59470683 Trre1g05374 1 59465174 59470683 ECH