Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05350 ATGGCGGCAGAATTTTCCACCGCCACAACCTTAAAACCCTACACTCTCATCCAAACCTCAACTTCCCCTAAAACAACCTCAACACTGTTGTTCTTCACCCCTTTAAGAGGCTTCCGTCATAGCAACAAAATCCTTCAAACACAAACAATAACAACTAAGAAGCGTTTCACTGTTTGTGTTATCACAGAGGATCCAAAAAACAGCACCCAAATCAAAACAGATGTAAAATCAGAACCTCCCATTGATAAACCCAACCCTCATTTCTTAGTTGCACAAAAATTGGCTAGAAAAAAGTCACAAAGGTTCACTTACCTTGTTGCTGCTGTAATGTCTAGCTGTGGTGTTACTTCCATGGCAATTTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTGGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGTACATTTGCCCTCTCAGTGGGTGCTGCTGTGGGTATGGAGTTTTGGGCAAGATGGGCACATAGGGTTCTATGGCATGCTTCCTTGTGGCATATGCACGAGTCACACCATCGACCAAGAGAAGGTCCATTTGAGCTTAATGATGTTTTTGCAATAATTAATGCTGTCCCTGCAATTGCACTTCTCTCATTCGGTTTTTTTAACAAGGGATTGCTTCCTGGACTCTGTTTTGGTGCAGGTCTTGGAATTACAGTGTTTGGGATTGCTTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAATGTGCCCTATTTCACAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGGCTCTTTTTAGGACCTGAGGAAGTTGAAGAAGTGGGAGGACTGGAAGAGCTAGAGAAAGAGATAAGTAGAAGAACAAGATCATATACTGGCTCATGA 927 0.4315 MAAEFSTATTLKPYTLIQTSTSPKTTSTLLFFTPLRGFRHSNKILQTQTITTKKRFTVCVITEDPKNSTQIKTDVKSEPPIDKPNPHFLVAQKLARKKSQRFTYLVAAVMSSCGVTSMAILAVYYRFSWQMEGGGEVPWSEMFGTFALSVGAAVGMEFWARWAHRVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFNKGLLPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPEEVEEVGGLEELEKEISRRTRSYTGS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05350 308 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 305 IPR045019 GO:0016491
Trre1g05350 308 Pfam Fatty acid hydroxylase 152 279 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05350 Trre-Chr1 59287917 59289948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05350 1 222 Chloroplast and Mitochondria Gene Families AT4G25700 59.912 4.87e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05350 K15746 - gmx:100802778 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01209 11 11563551 11566646 Trre1g05350 1 59287917 59289948 ECH
Trre1g05350 1 59287917 59289948 Trre1g05350 1 59287917 59289948 ECH
Trre11g01209 11 11563551 11566646 Trre1g05350 1 59287917 59289948 PCT