Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05335 ATGGCTGAAGATTGGGATCTTTTTGCCATTGTTAGAAGTTGCCAATCAACCACCAATACTAGCACAACCACAACTAATAGTACCATACCATCTTCCATTAATTCCACCTCTAATTTGAAGGTAGAATTAGAATATGATGCATTTTCTTTTCCTAATATAGTGCAACCTATAACCAATGAGGTTCAAGGGTTAAACCAATTATTCACATCTTTTAACCCCACTACCAACCCCAACACCACTATTACCACTAGTGGTTATGGTATCAATCCCAATTCCCCTAATATTGCAAGATGCATTGGACAACAACAAAACAATATTGCTCCTACTACTTCCACTTCCATTTGGCCTAATTTTGTTCAAGAAGCCTCCACTTCTAGCTTCAACAAATTCTATAACCAACAACAACATCAACTACAAGTAATTCAGAAACAAGAATTCCATATACCTCAAAGCACACAGCCTCAAACACCAAGATCAAGAAAAAGAAAAAGTCAACAAGGAAAAATGGTGTGTCATGTAACTGCAGATAACCTCTCTACAGATTTGTGGGCATGGAGAAAATACGGACAGAAACCCATTAAGGGTTCTCCATATCCAAGGAACTATTATAGATGTAGTAGTTCCAAAGGTTGTACCGCGCGAAAGCAAGTTGAAAGGAGCAACACCGAAACAGACATGTTTATTGTGACATACACCGGTGATCACAACCACCCTAGACCCACCCACCGGAACTCGCTTGCTGGAAGTACACGGACAAAGTCTCCGGCGATACAACCATCCACTTCAATTTCTTGTCAACCCAACACCGCAATTTCTTGCTCCTCCTCTTTAGCACCAAACTCTTTTGGTGAAGAAGAAGAAGAAGAAATTGACATGGAAATTGAAACTGATGAAGAAGGTGAAGATGGTTGTGATATTCCACAATCATCCAACCATGGTCAATAG 945 0.3989 MAEDWDLFAIVRSCQSTTNTSTTTTNSTIPSSINSTSNLKVELEYDAFSFPNIVQPITNEVQGLNQLFTSFNPTTNPNTTITTSGYGINPNSPNIARCIGQQQNNIAPTTSTSIWPNFVQEASTSSFNKFYNQQQHQLQVIQKQEFHIPQSTQPQTPRSRKRKSQQGKMVCHVTADNLSTDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTETDMFIVTYTGDHNHPRPTHRNSLAGSTRTKSPAIQPSTSISCQPNTAISCSSSLAPNSFGEEEEEEIDMEIETDEEGEDGCDIPQSSNHGQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05335 314 MobiDBLite consensus disorder prediction 147 169 - -
Trre1g05335 314 SUPERFAMILY WRKY DNA-binding domain 174 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g05335 314 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g05335 314 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 275 IPR044810 GO:0003700
Trre1g05335 314 MobiDBLite consensus disorder prediction 232 314 - -
Trre1g05335 314 FunFam WRKY transcription factor 22 162 233 - -
Trre1g05335 314 MobiDBLite consensus disorder prediction 242 281 - -
Trre1g05335 314 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g05335 314 MobiDBLite consensus disorder prediction 282 304 - -
Trre1g05335 314 Gene3D WRKY domain 163 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g05335 314 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05335 Trre-Chr1 59206788 59208069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05335 158 259 WRKY Transcription Factor Family AT5G52830 79.412 7.41e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g05335 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05335 - - mtr:11414845 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01109 15 8587974 8589705 Trre1g05335 1 59206788 59208069 ECH
Trre13g02455 13 22022580 22023836 Trre1g05335 1 59206788 59208069 ECH
Trre15g00448 15 3218666 3223109 Trre1g05335 1 59206788 59208069 ECH
Trre1g05335 1 59206788 59208069 Trre1g05335 1 59206788 59208069 ECH