Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05321 ATGACCCATTGGGATGGATTGTTGTCTAAGCCTGAGGAGAGAATTTTGGTTCTTGGGGCCACCAACATGCCCTTTGATCTTGACGAAGCAGCTATAAGAAGGTTCCAACGCAGGATTATGGTTGGTCTTCTGTCATCTGAAAACAGGGAAACAATTTTAAAAACCCTTCTGGCTAATGAAAAACAGGACAATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAATGGAAGTGATCTTAAGAACTTGTGCGTGACTGCGGCGTATCGGCCCCTTAAGGAGCTAATACAACAGAAGAAGGAAAAAGAAATAAGAAACAAGAAAAATGTGGCAGAAGCTGAAAGCTCAAAAGATGCTTCCAATGATACCGAAGAAGATCAAGCGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACATGCAAAGAATAAGGTGGCTGCAAGTTTTGATGCAGAAGGATCAATGATGAACAGTCTAAAGGAGTGGAATGAATTGTATGGAGATGGAGATGGAAGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTATGTTAG 564 0.4113 MTHWDGLLSKPEERILVLGATNMPFDLDEAAIRRFQRRIMVGLLSSENRETILKTLLANEKQDNIDFKELSTMTEGYNGSDLKNLCVTAAYRPLKELIQQKKEKEIRNKKNVAEAESSKDASNDTEEDQAIALRPLNMEDMRHAKNKVAASFDAEGSMMNSLKEWNELYGDGDGSSRKKEEQLSYLC 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05321 187 Gene3D - 1 165 IPR027417 -
Trre1g05321 187 Gene3D - 44 148 - -
Trre1g05321 187 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 185 - -
Trre1g05321 187 ProSitePatterns AAA-protein family signature. 15 34 IPR003960 GO:0005524|GO:0016887
Trre1g05321 187 MobiDBLite consensus disorder prediction 166 187 - -
Trre1g05321 187 Coils Coil 94 114 - -
Trre1g05321 187 MobiDBLite consensus disorder prediction 108 129 - -
Trre1g05321 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 112 IPR027417 -
Trre1g05321 187 Pfam AAA+ lid domain 64 106 IPR041569 -
Trre1g05321 187 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05321 Trre-Chr1 59091857 59093136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05321 15 114 Calmodulin-binding Proteins AT3G56690 34.188 7.14e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05321 - - mtr:11428492 263.077