Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05319 ATGATGGAAGAGAAGAAAGTTTTGTTGTCAACAGCTTTGTTGTTGGGGTTGGGTTTGGGACTTGGAATATGGGTTTATCAAATTGGGGTTTTGTTGGAAGCACTGACACTGAGTGTTGGGATTGGGTTGTGTGTAGGATTGGCAATATGGGTTGTTGTTGGTTTTGGAGATGATCATGTGTCTAATAAGGTTTCTTCTGAGGATCAGACTGTGATGGAGGAGCTGATGAAACTAGTCATTGATGGAAAGGATAGTGAAATTACATTTGATAAGTTTCCTTATTACTTAAGTGAAAGAATAAAAAATTTGTTGACAAGTGCTGGATATTTTCACTTAAAACAACATGACTCATCCAAGCACACAAGGAACCTTTCCCCAGTAACCCGAGCTATTTTACTTTCTGGACCTGCAGAATTTTATAAGGAGGAGCTTGCCAAAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTTCTTGATGTTAATTACTTCTCTTCAAAGATGCCGGCCAAATACAGATGTCCTACAAAAGAACCATATTTTAAAAGGTCCATATCTGAGGCGACTCTGGAGTGTGTGTCTGGTTTATTTAGTTCCCTGTCAATCCTCCCATCAACGGGCGCAATCAGAGCTCCTTCAAAGTCCACTAGCCGCTACAGTTTTGATGAAAAGCTTTTCCTAGATTCACTCTACAAGGTCTTGGTTTCTATATCAGAAACTGGATCTGTTATTTTATACATCAAGGATGTTGAGAAGATCTTTCTTCAATCACCAAGGATGTACAATTTGTTTCAACAGCTATTAAATAAACTTTCAGGATCAGTGTTGGTACTCGGTTCCCGGAATTATGATTTGAAAGATAAATGTATAAAAGTTGATGAAAAACTCACTATGTTATTCCCTTACAACATTGATATCAAGCCACCTCAAGACGAGGCTCATCTCAAAATCTGGAAAAGACAACTAAAAGAGGCCACAAAAAAGACTCAATTGAAAGATTACACCATCCGTGTTGCTGAAGTGCTTGCAGCAAATAACCTTGATTGTGATGACTTGGATACAATCAGCCATACTGACATGATGCTACTCAGTAAGCAAACTGAAGAGATTGTGGCATCTGCAATTTTTAATCACTTGAAGGATACCCAAAATCCAGAATACCGAAATGGAATCCTAATTATACCGGCCAAGAGTTTGTGCCATGTATTGAGTCTGTTCCAGGAGGGTGAAAGTGGTGAGAAGGATAATAAGAAGACTAAAAAAGAATCAGAAAAGGACGATGCCAGAAAAGATAAACCAAAAGGGTCAAAGAAAGACAGTGATATTAAAGCTTCTGCAGAAGCAGATGGTGGTGCCGGAAAAGATAAAACAAAAGGATCAAAGAAGGACAAAGCTTGTAAAAAATTAGATAGATTTTGTTCTGACACTGCCTTGGAGGATGACATAAGAAAAGAGCTTGTTCGTGCAAATGAGATAAAGGTGACTTTTTCAGATATCGGTGCATTGGATGACGTTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCAAAGGCAATGGGATTCTGAAACCATGTAAAGGTGTGTTGCTGTTTGGGCCACCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTATCTTCGTCCACAATCCACTCAATGTGGCACGGACAATCTGAAAAGAACGTCCGAGCTCTGTTTTCAGTAGCGGCAAAGGTTGCCCCAACTATTATTTTCATTGATGAAGTTGATAGCATGCTTGGACAACGGTCTACTGGTGAGAACAGTCCAATGAGAAGGGTTAAAAACGAATTCATGTCCCGTTGGGATGGACTATTGTCAAAACCTGATGACAAGATTATTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGATTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAACAGGGAAACAATCTTGAAAACTCTTCTAGCTAACGAAAAACATGACGATATAGACTTCAAAGAGCTTTCAACTATGACTGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCACGACTGCAGCATATCACCCCCTTAAGGAGCTAATACAACAGGAGAAGGAAAAAGAAATGATTCAGAAAAACAACAAGAAAAAAGCGGCAGAAGCTGAAATCTCAAAAGATGCTTCAAATGATACCGAAGAAGATAAAGAAGATCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGATCAAGCTGAAATCTCAAAAGATGCTTCCAATGATACCAAAGAAGATAAAGAAGATCAAGCGATTGCCCTTGGGCCATTAAACGTGGAAGATCAAGCTGAAATCTCAAAAGATGTTTTCAATGGTACCGAAGAAGATAAAGAAGACCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAAATAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAGGTTAAAGGAGTGGAATAATTTGTTTGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGCAGCTCAGTTATTTCTTTTAG 2622 0.3947 MMEEKKVLLSTALLLGLGLGLGIWVYQIGVLLEALTLSVGIGLCVGLAIWVVVGFGDDHVSNKVSSEDQTVMEELMKLVIDGKDSEITFDKFPYYLSERIKNLLTSAGYFHLKQHDSSKHTRNLSPVTRAILLSGPAEFYKEELAKALAHYFESKLLFLDVNYFSSKMPAKYRCPTKEPYFKRSISEATLECVSGLFSSLSILPSTGAIRAPSKSTSRYSFDEKLFLDSLYKVLVSISETGSVILYIKDVEKIFLQSPRMYNLFQQLLNKLSGSVLVLGSRNYDLKDKCIKVDEKLTMLFPYNIDIKPPQDEAHLKIWKRQLKEATKKTQLKDYTIRVAEVLAANNLDCDDLDTISHTDMMLLSKQTEEIVASAIFNHLKDTQNPEYRNGILIIPAKSLCHVLSLFQEGESGEKDNKKTKKESEKDDARKDKPKGSKKDSDIKASAEADGGAGKDKTKGSKKDKACKKLDRFCSDTALEDDIRKELVRANEIKVTFSDIGALDDVKESLQEAVMLPLRRPDLFKGNGILKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSSSTIHSMWHGQSEKNVRALFSVAAKVAPTIIFIDEVDSMLGQRSTGENSPMRRVKNEFMSRWDGLLSKPDDKIIVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENRETILKTLLANEKHDDIDFKELSTMTEGYSGSDLKNLCTTAAYHPLKELIQQEKEKEMIQKNNKKKAAEAEISKDASNDTEEDKEDQVIALRPLNMEDQAEISKDASNDTKEDKEDQAIALGPLNVEDQAEISKDVFNGTEEDKEDQVIALRPLNMEDMRQANNKVAASFAAEGSMMNRLKEWNNLFGEGGSRKKEEQLSYFF 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05319 873 ProSitePatterns AAA-protein family signature. 637 656 IPR003960 GO:0005524|GO:0016887
Trre1g05319 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 733 IPR027417 -
Trre1g05319 873 Gene3D - 666 737 - -
Trre1g05319 873 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 72 872 - -
Trre1g05319 873 MobiDBLite consensus disorder prediction 411 461 - -
Trre1g05319 873 Pfam AAA+ lid domain 686 727 IPR041569 -
Trre1g05319 873 Coils Coil 719 741 - -
Trre1g05319 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 328 IPR027417 -
Trre1g05319 873 MobiDBLite consensus disorder prediction 727 761 - -
Trre1g05319 873 MobiDBLite consensus disorder prediction 727 768 - -
Trre1g05319 873 Gene3D - 493 665 IPR027417 -
Trre1g05319 873 SMART AAA_5 531 667 IPR003593 GO:0016887
Trre1g05319 873 Pfam ATPase family associated with various cellular activities (AAA) 535 664 IPR003959 GO:0005524|GO:0016887
Trre1g05319 873 Gene3D - 59 330 IPR027417 -
Trre1g05319 873 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 493 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05319 Trre-Chr1 59071105 59077420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05319 493 724 Calmodulin-binding Proteins AT3G56690 40.756 2.30e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05319 - - mtr:11428492 1055.82