Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05318 ATGATGGAGTTGGAAGACATGGTTGAGTTGTCTATTTTAGGTGTTGTGGCTGGGGTGACTATGTGGGTTGGAATATTGGAGATTTTTGGACCTCATATATATAAATATGATCAGAAGATTGCGATGGAGAAGATCATGAAACTAGTCATTGATGGGAAGGATACTGGAGTCACATTTAATGACTTTCCTTATTTCTTAAGTGAAAAAGTCAAAATTTTGTTGACAAGTGCTGGATATGTTCATTTAACAAAACATGGTTTATCCAAACACATTTTGAACCGTTCGCCAATAAGCCAATCTATTTTGCTTTCTGGACCTGCAGAATTTTATCAGGAAAAGCTCGCCAAAGCTTTAGCACATTACTTTAAATCGAAGTTACTAGTTCTTGATATTAAACCTGTGACTGTGAAGAAGTGTACAAGCAGCTTCTGTTTTGATGGGAATCGTTTTCTAGATTCACTCTACAAGGTATTGGTTTCTATATCAGAATCTGATTCTGTTATCTTGTACATCAAGAATGTTGAGAAGATCTTTCTTCAATCACCTAAGATGTGTCGTTTGTTCCAAAATCTATTAAATAAACTTTCAGGATCAATGTTGGTAATCGGTTCCCGAACTTATGATTCAGAAGATAAATGCACAAAAGTTGATAAAAGACTCACTAAGTTATTCCCTTGCAACATTGAGATCAAACAGCCTCAAGATACGTCTCGTCTCAAAATCTGGAAAGACCAACTAGAAGAGACCGTGAAAAATACTCAGATGAGAGATAACCGAAACCGCATTGCTAAATTGCTTGCAGCAAATGACATTGAATGTGATGACCTGAATTCTATCGGCCATAAGGACATTATGCTACTCAGTAATCTCACCAATGAGATTGCGACATCTGCAATTTTTTATCAACTGATGGATAACAAAAATCCAGAATACCGAAATGGAAAGCTAATTATATCGGCCAAAAGTTTGTGCCATGTATTGAGGGCGTTCCAAGAGGGTGAAAGTACTGAGAAGGAAAATAACAAGATCACTAAAAGGGAATCACAAAAGAAAAATCCTCCCGACAATGACTTTGAGGAGGAGATAAGAAAAGAGCTTATTCCTGCAAATGAGATAAAGGTGACTTTTACAGATATTGGTGCATTGGATGATGTTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCGAAAGTGGTGGGGTTTTGAATCCATGTAAAGGTGTATTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTGCATCCACCATCACTGACGTGTGGTTCGGACAATCTGAAAAGAGCGTCCGAGCTTTGTTTTCTCTAGCGGAAAAGGTTGCCCCAACTGTTATTTTCATTGATGAAGTTGATAGCATGCTTGCGCAGCGGGGGTCTAACAATGAGAGCAACACAATGAGAAGGATTAAAAATGAATTCATGTCCCATTGGGATGGGCTATTGTCAAAACCTGATACGAGAATTGTTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGAACAGGGAAAAGATCCTGAAAACTATTTTAGCTAGGGCAAACCAAAAAGATATAGACTTCAAAGAGCTCTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGGATCTGTGCACGACTGCAGCTTATCGCCCCGTTAAGGAGTTACTGCAACAGAAGAAGGATAATCAAGTGATTTCCCTCAGGCCTTTAAACATGGAAGACATGAGACATGCAAAGAATAAGGTGACTGCAAGTTTTGCTGCAAAAGGATCAATGATGAACAGGTTGAAGGAGTGGAATGATATATATGGAGAAGGAGGTTCAGGGACGAAAGAAGGGCATAAGCAGCTTAGTTATTATATTTAG 2001 0.3913 MMELEDMVELSILGVVAGVTMWVGILEIFGPHIYKYDQKIAMEKIMKLVIDGKDTGVTFNDFPYFLSEKVKILLTSAGYVHLTKHGLSKHILNRSPISQSILLSGPAEFYQEKLAKALAHYFKSKLLVLDIKPVTVKKCTSSFCFDGNRFLDSLYKVLVSISESDSVILYIKNVEKIFLQSPKMCRLFQNLLNKLSGSMLVIGSRTYDSEDKCTKVDKRLTKLFPCNIEIKQPQDTSRLKIWKDQLEETVKNTQMRDNRNRIAKLLAANDIECDDLNSIGHKDIMLLSNLTNEIATSAIFYQLMDNKNPEYRNGKLIISAKSLCHVLRAFQEGESTEKENNKITKRESQKKNPPDNDFEEEIRKELIPANEIKVTFTDIGALDDVKESLQEAVMLPLRRPDLFESGGVLNPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSASTITDVWFGQSEKSVRALFSLAEKVAPTVIFIDEVDSMLAQRGSNNESNTMRRIKNEFMSHWDGLLSKPDTRIVVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENREKILKTILARANQKDIDFKELSTMTEGYSGSDLKDLCTTAAYRPVKELLQQKKDNQVISLRPLNMEDMRHAKNKVTASFAAKGSMMNRLKEWNDIYGEGGSGTKEGHKQLSYYI 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05318 666 Gene3D - 34 254 IPR027417 -
Trre1g05318 666 SMART AAA_5 411 548 IPR003593 GO:0016887
Trre1g05318 666 Pfam AAA+ lid domain 567 603 IPR041569 -
Trre1g05318 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 602 IPR027417 -
Trre1g05318 666 ProSitePatterns AAA-protein family signature. 518 537 IPR003960 GO:0005524|GO:0016887
Trre1g05318 666 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 43 657 - -
Trre1g05318 666 Pfam ATPase family associated with various cellular activities (AAA) 415 545 IPR003959 GO:0005524|GO:0016887
Trre1g05318 666 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 373 550 - -
Trre1g05318 666 Gene3D - 547 627 - -
Trre1g05318 666 Gene3D - 373 645 IPR027417 -
Trre1g05318 666 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05318 Trre-Chr1 59064519 59068374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05318 373 615 Calmodulin-binding Proteins AT3G56690 38.462 7.55e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05318 - - tpra:123913080 920.613