Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05290 ATGGCAGGATTTTGGAGTGTGTTTTGTGGACAATCTGGTTGTTCAAAGCCTTGCAATTATTATGATGTTACGTTTTTCATTGATCCTTTCGCATGTATCAACCATTTCGTAATATCTTGCTTTGATTTGTTGCTACTCATCATGCTCCTGTTTATAATGATCAAAAAGTCATTATCAAAACCATATCAGGGTGTTCTACATGGCCAAAGATATTCAAATCTGCAACTAGTTTCTGCCATAACCAACAGCATTCTTGGATTAGTGCATTTATTCTTTGGTATTTGGATTTTAGAAGAGAAGTTGAGAAAAAACCAAACTGCATTACCTCTTGATATGTGGTTGCTAGAATTATTTCAGGGATTAACATGGTTGTTAGTTGGTTTAACATTAAGTCTTAAGTTGAAGCAACTTCCAAGATCATGGTTAAGGGTTTTTTCTATTCTTATGTTCTTGGTTTCTGGTATAAACTGTGCTATATCCTTGTTTTATGCAATTAGTAAGATGCAACTGTCACTCAAGGTAGCATTAGATGTTCTATCTTTTCCTGTTGCAATTGTATTGCTACTATGCACATACAAGGAATCTAGATATAGCGGCACTGACAGAGAAATCGATGAAAGCCTTTATGCCCCTTTAAACGGCGAGTTGAAAAAAAATGATTCTGTTAGTCATGTGACGCTATTTGCCAAAGCTGGATTCTTCAGTAGGATGTCATTTTGGTGGATGAATTCATTAATGAAGACAGGTAAAGAGAAAACTCTTCAGGATGAAGATGTCCCGAAGTTGGGGGAGGAAGATAGAGCAGAAAGTTGTTATTTGATGTTTCTAGAGCAATTAAACAAGCAGAAACAGAAGGATCCATCCTCACAACCATCTGTTTTGAAGGCAATAGTTTTATGCCATTGGAGAGAAATTTTGATATCTGGATTCTTTGCATTGCTCAAGGTACTTGCACTCTCTTCTGGACCTTTGCTTCTGAATTCCTTTATATTAGTCGCCGAGGGTTATGAGAGTTTCAAATATGAAGGTTTTGTATTGGCCATAGCACTTTTCTTTATAAAAAATATAGAATCTCTATCACAAAGGCAGTGGTATTTCCGCTCGAGACTAATCGGTCTCAAAATTAGGTCGCTACTAACTGCAGCCGTTTATAAAAAGCAACTGAGGTTATCTAACTCTGCTCGATTGATGCATTCTAGTGGTGAGATAATGAATTATGTGACTGTGGATGCGTATAGAATTGGAGAATTTCCTTACTGGTTTCATCAAACGTGGACAACTAGCTTCCAGCTATGTATCTCATTAGTAATACTTTATCGTGCCATTGGACTGGCTACAATAGCTTCCTTGACAGTGATAGTTATCACAGTACTTTGTAATACCCCGCTTGCAAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTTGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCGCTTGTGAATATGAAGGTGCTGAAATTGTATGCATGGGAAACCAGCTTTAAAAATTGTATAGAAAGATTAAGGAATGAGGAGCTTAAATGGTTGTCTGCAGTGCAATTGAGAAGGGCATACAACACGTTTCTCTTTTGGTCGTCACCAGTTTTGGTCTCTGCTGCTTCGTTTGGAGCTTGTTATTTTCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTGGCGACTTTACGCCTCGTTCAAGATCCGATTAGGACCATCCCTGATGTTATTGGAGTGGCCATTCAGGCAAAAGTTGCATTTACTCGGATTCTAAAATTCCTGGAGGCGCCCGAACTGCAGAGTGAAAATGTTAGGAAGAGGTGTTCAGAAGGCAATATGAGAGGCTCAATTTCAATCAAATCTGCCGACTTTTCATGGGAAGATAATAATGTATCAAAATCAACATTGAGAAATGTTAATTTGGAAGTTAGACCTGGACAAAAGGTCGCAATATGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAACACTCAAGGGAAAATTGATGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAAACAGGTTCAGTAAGGGATAATATATTGTTTGGATCACCTATGGATGCTCAAAAATATCAGGAAACGCTTCACAGGTCTTCACTAGTTAAAGATCTTGAGCTGTTTCCCCACGGCGATCTCACTGAAATAGGAGAAAGAGGGGTTAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCCCGTGCTCTATATCAGAATGCTGATATATATCTCTTGGATGATCCTTTCAGTGCCGTTGATGCACATACTGCCACAAATTTGTTTAATGAATACATCATGGAAGGACTTGCTGAGAAGACGGTCTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTTTGTCTTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCTTATCAAGATTTGTTGACATCAAGCAAAGATTTTCAGGATCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTATGGACGTTACTTCTTCTGGAAGAAATTCAAATTCCGTGAAAGAGATTAGAAAAGCATATGTTGAGAAGGAAAAGCAATTTGAAGCACCAAAAGGCGATCAATTGATTAAGCAAGAAGAGAGAGAGATAGGAGACCAAGGGTTTAAGCCTTACATACAGTATCTAAGTCAGAACAAAGGATACATATATTTCTCGGTGGCTGTTCTTTCACAGATTATATTTGTGATTTGTAATATATTGCAAAACTCGTGGATGGCTGCTAATGTTGACAATCCCAAAGTCAGCACTTTGAAATTGATTCTAGTTTACTTGTCGATTGGAGTTACTTCAACAATTTTCTTATTGACGCGAAGTCTTTTTGCAGTTGCTTTGGGTCTTCAATCTTCAAAATCTTTGTTTTTACAGCTACTAAATTCCCTATTTCGTGCACCTATGTCGTTTTATGATTCCACGCCTTTAGGAAGGATACTTAGTAGGGTCTCTGCTGATCTCAGCATTGTTGATCTTGATGTTCCACTTGGCCTTCTTTTCGCTGTCGCGGCTACTTCGAATTGTTATGCTAGTCTAACTGTTTTAGCAGTAGTTACTTGGCAGGTTTTGTTTGTCTCCATTCCGATGATTTATTTCGCACTGCGCTTGCAGAGATACTACTTTGCCACAGCAAAAGAGCTGATGCGGATGAATGGCACAACAAAATCCTTTGTGGCTAACCATCTAGCTGAATCTGTTGCCGGAGCTGTGACAATAAGGGCCTTTGAAGAGGAAGATCGTTTTTTTGTAAAGAACTTTGATCTAATTGATATCAATGCTACTCCTTTCTTTCATAGTTTTTCTGCAAACGAGTGGTTGATTCAACGGTTAGAAACAGTCAGTGCAGTTGTTCTTGCATCCGCTGCACTTTCAATGGTTGTACTTCCACCCGGAACATTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACGCTTCCTTAGTATTTTCAATTCAAAATCAATGCAATATAGCTAATTACATAATATCAGTGGAGAGACTAAATCAGTATACACATGTACCAAGTGAGGCCCCAGAAGTAATAGAAGGAAATCGTCCTCCACCGAATTGGCCAGTTGTTGGTAGAGTAGAAATAAAGGAACTTCAGATACGGTACAGACCTGATGCGCCACTAGTACTCCGCGGAATCACATGTACATTTCAAGGAGGACACAAAATTGGTATAGTTGGTCGCACCGGCAGTGGCAAGACCACTCTTATTGGCGCTTTATTTCGTTTAGTAGAGCCAGCAGGTGGAAAAATCATTGTTGATGGCATTGACATTAGTTCCATTGGACTTCATGATTTGAGGTCACGTTTTGGGATTATACCTCAAGACCCTACTCTTTTTAATGGAACAGTCAGATACAATTTGGATCCGTTATCTCAACACTCTGATCAAGATATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAAGAAAAAGAAGGTGGTTTAGATTCATCAGTTGTTGAAGATGGTGCAAATTGGAGCATGGGACAACGCCAGTTATTCTGTTTGGGTCGTGCTTTGCTGAGAAGAAGTCGGGTATTGGTGCTTGATGAAGCAACCGCATCAATTGATAATGCAACTGACTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCGGATTGTACGGTAATCACGGTAGCTCACAGGATACCAACTGTCATGGATTGCACCAAGGTTCTTTCCATCAGTGATGGAAAACTGGTAGAGTATGACGAGCCAATGAAGTTGATGAAGAGAGAAGGATCTTTGTTCGGGAAGCTTGTCAAAGAATATTGGTCTCATTTTCAATCCGCAGAGGCTCATTAA 4440 0.3959 MAGFWSVFCGQSGCSKPCNYYDVTFFIDPFACINHFVISCFDLLLLIMLLFIMIKKSLSKPYQGVLHGQRYSNLQLVSAITNSILGLVHLFFGIWILEEKLRKNQTALPLDMWLLELFQGLTWLLVGLTLSLKLKQLPRSWLRVFSILMFLVSGINCAISLFYAISKMQLSLKVALDVLSFPVAIVLLLCTYKESRYSGTDREIDESLYAPLNGELKKNDSVSHVTLFAKAGFFSRMSFWWMNSLMKTGKEKTLQDEDVPKLGEEDRAESCYLMFLEQLNKQKQKDPSSQPSVLKAIVLCHWREILISGFFALLKVLALSSGPLLLNSFILVAEGYESFKYEGFVLAIALFFIKNIESLSQRQWYFRSRLIGLKIRSLLTAAVYKKQLRLSNSARLMHSSGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILYRAIGLATIASLTVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETSFKNCIERLRNEELKWLSAVQLRRAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVAIQAKVAFTRILKFLEAPELQSENVRKRCSEGNMRGSISIKSADFSWEDNNVSKSTLRNVNLEVRPGQKVAICGEVGSGKSTLLAAILREVPNTQGKIDVYGKFAYVSQTAWIQTGSVRDNILFGSPMDAQKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAEKTVLLVTHQVDFLPAFDFVLLMSDGEILQAAPYQDLLTSSKDFQDLVNAHKETAGSDRLMDVTSSGRNSNSVKEIRKAYVEKEKQFEAPKGDQLIKQEEREIGDQGFKPYIQYLSQNKGYIYFSVAVLSQIIFVICNILQNSWMAANVDNPKVSTLKLILVYLSIGVTSTIFLLTRSLFAVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSADLSIVDLDVPLGLLFAVAATSNCYASLTVLAVVTWQVLFVSIPMIYFALRLQRYYFATAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFVKNFDLIDINATPFFHSFSANEWLIQRLETVSAVVLASAALSMVVLPPGTFSSGFIGMALSYGLSLNASLVFSIQNQCNIANYIISVERLNQYTHVPSEAPEVIEGNRPPPNWPVVGRVEIKELQIRYRPDAPLVLRGITCTFQGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQDIWEVLGKCQLQEAVQEKEGGLDSSVVEDGANWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPMKLMKREGSLFGKLVKEYWSHFQSAEAH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05290 1479 FunFam ABC transporter C family member 5 882 1214 - -
Trre1g05290 1479 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Trre1g05290 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Trre1g05290 1479 Gene3D - 1217 1468 IPR027417 -
Trre1g05290 1479 Pfam ABC transporter transmembrane region 305 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g05290 1479 Pfam ABC transporter transmembrane region 917 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g05290 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Trre1g05290 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1460 IPR027417 -
Trre1g05290 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g05290 1479 SUPERFAMILY ABC transporter transmembrane region 294 599 IPR036640 GO:0005524|GO:0016020
Trre1g05290 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 845 IPR003439 GO:0005524
Trre1g05290 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g05290 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 845 IPR027417 -
Trre1g05290 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Trre1g05290 1479 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Trre1g05290 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Trre1g05290 1479 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Trre1g05290 1479 FunFam ABC transporter C family member 10 289 602 - -
Trre1g05290 1479 SUPERFAMILY ABC transporter transmembrane region 906 1213 IPR036640 GO:0005524|GO:0016020
Trre1g05290 1479 Gene3D ABC transporter type 1, transmembrane domain 296 595 IPR036640 GO:0005524|GO:0016020
Trre1g05290 1479 SMART AAA_5 649 822 IPR003593 GO:0016887
Trre1g05290 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Trre1g05290 1479 CDD ABCC_MRP_domain1 621 822 - -
Trre1g05290 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1467 IPR003439 GO:0005524
Trre1g05290 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1467 - -
Trre1g05290 1479 Gene3D ABC transporter type 1, transmembrane domain 882 1214 IPR036640 GO:0005524|GO:0016020
Trre1g05290 1479 FunFam ABC transporter C family member 10 604 858 - -
Trre1g05290 1479 Gene3D - 596 864 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05290 Trre-Chr1 58928301 58934193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05290 616 867 Calmodulin-binding Proteins AT2G36910 30.435 1.92e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05290 K05666 - gmx:100811468 2415.57