Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05287 ATGCTCAGTCACATTATGTTCATTCTCCTTTTCTTTATCTTCATAACTTTGATTCTCCCTTCACTTTCTCTCCCTTCACAAAACGTAACACTCTTTGGTGATGCTTCATACACAGACACAGCCATTAGTCTCACCAATCACCAACTCAATTGTCTTTCTTCTTCAACTTCTGGAATTGGAAGAGCTTTCTATCTCTACCCTGTTCATTTTCTTGATCCTTTAACAAACTCAACCGCTTCTTTTTCATGTCGTTTCTCTTTCTCAATCCATTCATCACCTTCTTGTCTTTCTTCTTCTGATGGCATTGCTTTTCTCATTTCATCAACCACTGATTTCTCATCTCTCTCTAATGGTTACATGGGTCTTCCTAATTCAGATAAAGATTCTTACTTTGCAGTCGAATTCGACACGAGCTATGATCCTTCTCTTGGTGACATTAATGGTAACCACATTGGTATTGATGTTAACAGTGTTGTTTCTTTTGCTTCTGTCGATGTTCTTTCACGTGGCGTTGATTTGAAAAGTGGAAAAATCATCACTGCATGGATTGAGTATAGAGATGATATGAAAATGGTTCGTGTTTGGGTTGGTTACTCTTCAACTAGACCTTTAACACCGATTCTTGCTTCACTCATTGATCTTTCTGAGAGATTTAAAGAGTTTATGCATGTTGGTTTCTCTGCTTCTAATGGAAAAGGTTCAAGTATTCACCTTGTTCATCATTGGCAGTTCAAAACTTTGAGTTATTCTCATTCTGTTAGTCCTATGGATGATGTAGAAGAAGGTGATTGCTTCTTGTGTTATGCCGGTGATTCGAAAGCGTCGAAGAAAAAAGGTGAAAATTTTAGTAGGATAAATTTTGGTGAGATAGCTCTTGGAATTGGTGGAATAACAGCTTTTGTTGTGTCTGTATTGGCACTAGGTGTTATGATACATGTTATCTTGAAAAGGAAAAAGGAGGGTGTAATTAGAAAGATTAAGGAAGGTCAAAGTTGTAGATTTCAAACAAATAAAGTTCCAATGAAGTTATCACTTTCGGAGATAACATCAGCTACAATGGGGTTTAATAGAGATAGACTAGTTGGTGAAGGTGCATCAGCAAAAGTTTATAAAGGGTCACTTCCATTTGGAGGTGATGTAGCTGTCAAGAGATTCGAAAAAGTTGATGATTTGGACCGTTTACATAACCCTTTTGCGACTGAGTTTGCTACAATGGTTGGTTGCTTGCGGCACAAGAATCTGGTTCAGCTTAAAGGATGGTGTTGCGAAGGGAATGAATTGGTGTTAGTTTATGAGTATCTACCAAATGGAAGCCTTGATAAAGTTCTGCATAGTAAGTCGAGTTCCTCGGTTGTTCTTTCGTGGAATCAAAGAGTTAATATAATTCTCGGCGTCGCTGCTGCTCTTACTTACCTTCATGAAGAATGTGAGAGACAGATCATTCATAGAGATGTCAAGACATGTAACATAATGCTTGATGCTGATTTCAATGCAAAACTTGGCGATTTCGGACTAGCAGAAGTTTATGAACATAGTTGTAGTACAAGGGATGCTACTATACCAGCAGGAACAATGGGGTATCTAGCACCTGAATATGTTTATTCCGGTGTTCCGACCGTGAAGACCGATGTGTATAGTTTCGGTGTCGTGGTGATTGAAGTTGCAACAGGGAGGAAACCTGTTGGAGACAACGGAACTTTGGTCGGCGATTACGTTTGGAATTTGTGGAAAAAGAATAGACTCATTGAGGCAGCCGATCCGAAATTGATGGGGGATTTCGATGTTATTGAGATGGAAAGGATGTTATTAGTAGGGCTTGTTTGTGTGCATCCTGATTATGAAAAGAGACCTAGAGTTAGAGATGCAGCTAGAATGATTAAGAAAGAAGCACCACTTCCATTGTTGCCAACAACTAAACCAAGGGTTAGAATTAGGCCTATTTGTCCTAATGATTCACCTGAAACACAAAATTTTGTTGATGATTGGGTTAGTATTGATGAGGCTCCTTATTTGACTCCTAGGAGCCATTTTAACTAG 2037 0.3878 MLSHIMFILLFFIFITLILPSLSLPSQNVTLFGDASYTDTAISLTNHQLNCLSSSTSGIGRAFYLYPVHFLDPLTNSTASFSCRFSFSIHSSPSCLSSSDGIAFLISSTTDFSSLSNGYMGLPNSDKDSYFAVEFDTSYDPSLGDINGNHIGIDVNSVVSFASVDVLSRGVDLKSGKIITAWIEYRDDMKMVRVWVGYSSTRPLTPILASLIDLSERFKEFMHVGFSASNGKGSSIHLVHHWQFKTLSYSHSVSPMDDVEEGDCFLCYAGDSKASKKKGENFSRINFGEIALGIGGITAFVVSVLALGVMIHVILKRKKEGVIRKIKEGQSCRFQTNKVPMKLSLSEITSATMGFNRDRLVGEGASAKVYKGSLPFGGDVAVKRFEKVDDLDRLHNPFATEFATMVGCLRHKNLVQLKGWCCEGNELVLVYEYLPNGSLDKVLHSKSSSSVVLSWNQRVNIILGVAAALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSCSTRDATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVIEVATGRKPVGDNGTLVGDYVWNLWKKNRLIEAADPKLMGDFDVIEMERMLLVGLVCVHPDYEKRPRVRDAARMIKKEAPLPLLPTTKPRVRIRPICPNDSPETQNFVDDWVSIDEAPYLTPRSHFN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05287 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 248 IPR013320 -
Trre1g05287 678 FunFam L-type lectin-domain containing receptor kinase S.6 317 433 - -
Trre1g05287 678 Gene3D - 19 259 - -
Trre1g05287 678 Gene3D Phosphorylase Kinase; domain 1 316 433 - -
Trre1g05287 678 SUPERFAMILY Protein kinase-like (PK-like) 336 625 IPR011009 -
Trre1g05287 678 Pfam Legume lectin domain 26 247 IPR001220 GO:0030246
Trre1g05287 678 ProSiteProfiles Protein kinase domain profile. 355 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05287 678 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Trre1g05287 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Trre1g05287 678 Pfam Protein kinase domain 356 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05287 678 Gene3D Transferase(Phosphotransferase) domain 1 434 631 - -
Trre1g05287 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 434 644 - -
Trre1g05287 678 PANTHER - 38 633 - -
Trre1g05287 678 CDD lectin_legume_LecRK_Arcelin_ConA 12 246 IPR001220 GO:0030246
Trre1g05287 678 SMART serkin_6 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05287 Trre-Chr1 58909904 58911940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05287 6 678 Receptor kinase-like Gene Family AT5G42120 53.802 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g05287 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05287 - - gmx:100783805 931.784