Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05282 ATGGCAGATCTTGTTAGTCACAGGAATGCAGACCGTGACATTCAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAATTACTTAAATATGGTCGTAAAGGAAAGCCGAAGTTTTGTCCATTTAGACTTTCCAAGGATGAGTTGTCAATAATCTGGTTTTCAAGTAGCGAAGAAAGAAGTCTGAAACTGTCTTCTGTCTCAAAAATTATTCCTGGACAAAGAACTGCTGTTTTCCAGCGATTTCCGCGTCCTGAGAAGGATTATTTATCTTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCGGGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGTGTGATGGAGGCCTGCATCTTGATGACAGTAAAGACTTGACCTCAAATAGTCCTAGTGAAAGTTCAGTCCGTGCTTCTCAAGACATTAGTTCTCCCGACGTTTCTCCTAGTGTGCCAAACACTTCTCCAAAGTCCTTTCAGCCTGAAAATACCTTAAATTCCGAAAGGTCACATGCACCATCAAACCTATCAAATATGCAAGTGAGAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGTACATCCAGTCATGGGTCTGCACCGGATGATTATGATGCTCTTGGAGATGTATACATATGGGGAGAGGTTATCTCTGAGAATGTTGTAAAAATTGGCGGCGATAAAAATGTCAGTTATTGTAACCCGAGAACTGACATTCTCCTCCCGAAGCCACTTGAATCCAATGTGGTTTTGGATGTACTTCAAATAGCATGTGGTGTCAAACACGCTGCTCTAGTGACAAGGCAAGGTGAAATGTTCACATGGGGGGAAGAATCTGGTGGACGCCTTGGCCATGGTGTTGGGAAGAGTGTGGTTCAACCTCGTCTAGTTGAAGCATTAGCTTCTTCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACATGTGCCGTTACAATGGCTGGTGAAATATATACATGGGGTGATGGCACTCACAATGCTGGACTTCTTGGTCATGGAACAAATGTTAGTCATTGGTTACCGAAGAGAATCGCGGGTCCACTAGAGGGGCTTCAGGTTGCTTTTGTCACTTGCGGTCCGTGGCACACAGCCTTGATAACTTCAACTGGGCAGCTATTTACATTTGGTGATGGAACATTTGGTGTCCTCGGCCATGGAGATAGACAAAATATTTCATATCCTAGAGAAGTAGAATTGTTATCTGGGTTGAGGACTGTATCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAGGTCATTGTGACACAATCTAGTGCTAGTATAGCATCGGGTAAATTGTTTACTTGGGGAGATGGAGATAAAAATCGTCTAGGACATGGAGATAAAGAAGCTCGGCTTGAACCAACCTGTATACCTGCTCTTATCGATCACAATTTTCAGAGAATTGCTTGCGGTCACAGTTTGACAGTAGGCCTGACAACGTCCGGACGCGTTTTCACGATGGGTAGCACTGTTTACGGCCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTTCCCTGTTTGGTTGGAGACAAACTTGCAGGAGAATGCGTTGAAGAAATTGCATGCGGAGCTTATCATGTGACTGTTTTAACCTCCAGGAATGAAGTGTATACTTGGGGAAAGGGTGCAAATGGAAGATTGGGTCACGGAGATGTTGAAGATCGAAAATCACCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGCGGTTCAAACTACTCGGCTGCGATATGCCTGCATAAGTGGGTATCCGGTGCTGAGCAATCTCAGTGCTCTACTTGTAGACAGGCATTTGGGTTCACTAGAAAGCGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGCTCACGGAAAGCATTAAGAGCAGCCCTTGCTCCTAATCCTGGGAAGCTGTATCGTGTTTGTGATACTTGTTTTGTGAAATTGAGCATGGTTGCAGAATCCAGCAATAATAATCGGAGGAATGCAATGCCTCGTTTTCCAGGAGAAAACAAGGACAGGTTAGAAAAGTCCGAGCTAAGGTTGTCGAAACCAGCTGTGCCTTCTAATATGGATTTGATAAAGCAGTTAGATAGTAAGGCAGCCAAACAGGGGAAAAAGGCTGATACGTTCTCTCTGGTTCGCACCTCACAAGCTCCATCTATGCTACAGCTGAAAGATGTTGTTTTGTCTACTGCTATGGACTTGAAACGCACAGTCCCGAGACCTATTCTTACACCGTCTGGAGTGAGTTCCAGGTCCGTGTCACCTTTCTCTAGAAGATCGAGCCCTCCTCGTTCTGCTACACCCATTCCAACAACATCCGGACTTGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAACGACCTTTTGAATCAAGAAGTGCTGAAGCTGCGTTCTCAGGTTGAGACCCTGAGACAGAGATGTGAGCTGCAAGAATTAGAGCTTAAAAAGTCAGCGAAAAAGACTCAAGAAGCTATGGCACTGGCTACTGAGGAATCTGCCAAATCCAAGGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAGGATCTGGCAGAGAGGCTTCCTCCTGATGTTTATGATGCCGATAAAATCAAACCAGCTTACCTGCCTAATGGTTTCGTCGAGCCAAATGGCATCCGTCATCCAGACTCAAACGGGGAGCACCACCACACGAGGGCGGAGTCAATCAGTGGTTCCAGTGTGGCTTCCATAGGACTTGAATCTTCTCTGATGAATAGAATTGATGGGAATTCACCTGGAAGCTATGCTACTTATTTTTACCAGCAAAACCGAGGATCTGTGACGACTAATGGGACAGATGATCACCGAGACGTTAAATTGCCAAACGGTGGTGGCGCGATTCAGGCAACCAACAATAGTGCGTCGGATACTGTTGATGGTAGGGATTCTGGGAATTTCCGAGATGATGAGAGTGGTTCGAGATCAAGGAATGATGTGTTGCCTGCTAATGCTAACAGTAATCAAGTTGAGGCAGAATGGATAGAACAGTATGAACCTGGTGTCTATATAACTCTGGTTGCCATGAGCGACGGAACAAGAGATTTGAGGAGAGTGCGCTTCAGCCGGAGAAGATTCGGAGAGCACCAAGCAGAAACTTGGTGGGCAGAGAACCGCGATAAGGTATATGAAAAGTACAATGTTCGTAGCACAGACAAGTCGTCCAGCCAAGCAGCGCGTAAGGCAGAAGATGCCGGTTCACCTGTTCTATAA 3372 0.4511 MADLVSHRNADRDIQQALIALKKGAQLLKYGRKGKPKFCPFRLSKDELSIIWFSSSEERSLKLSSVSKIIPGQRTAVFQRFPRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLGALISSGQGGRSKIDGWCDGGLHLDDSKDLTSNSPSESSVRASQDISSPDVSPSVPNTSPKSFQPENTLNSERSHAPSNLSNMQVRGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISENVVKIGGDKNVSYCNPRTDILLPKPLESNVVLDVLQIACGVKHAALVTRQGEMFTWGEESGGRLGHGVGKSVVQPRLVEALASSTVDFVACGEFHTCAVTMAGEIYTWGDGTHNAGLLGHGTNVSHWLPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRQNISYPREVELLSGLRTVSVACGVWHTAAIVEVIVTQSSASIASGKLFTWGDGDKNRLGHGDKEARLEPTCIPALIDHNFQRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKLAGECVEEIACGAYHVTVLTSRNEVYTWGKGANGRLGHGDVEDRKSPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDTCFVKLSMVAESSNNNRRNAMPRFPGENKDRLEKSELRLSKPAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSMLQLKDVVLSTAMDLKRTVPRPILTPSGVSSRSVSPFSRRSSPPRSATPIPTTSGLAFSKSITDSLKKTNDLLNQEVLKLRSQVETLRQRCELQELELKKSAKKTQEAMALATEESAKSKAAKEVIKSLTAQLKDLAERLPPDVYDADKIKPAYLPNGFVEPNGIRHPDSNGEHHHTRAESISGSSVASIGLESSLMNRIDGNSPGSYATYFYQQNRGSVTTNGTDDHRDVKLPNGGGAIQATNNSASDTVDGRDSGNFRDDESGSRSRNDVLPANANSNQVEAEWIEQYEPGVYITLVAMSDGTRDLRRVRFSRRRFGEHQAETWWAENRDKVYEKYNVRSTDKSSSQAARKAEDAGSPVL 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05282 1123 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Trre1g05282 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 696 IPR013083 -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Trre1g05282 1123 Gene3D - 460 620 IPR009091 -
Trre1g05282 1123 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 895 - -
Trre1g05282 1123 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Trre1g05282 1123 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Trre1g05282 1123 ProSiteProfiles BRX domain profile. 1045 1100 IPR013591 -
Trre1g05282 1123 Gene3D - 13 129 IPR011993 -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 1101 1123 - -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 999 1014 - -
Trre1g05282 1123 Coils Coil 831 865 - -
Trre1g05282 1123 FunFam PH, RCC1 and FYVE domains-containing protein 1 458 629 - -
Trre1g05282 1123 Pfam Transcription factor regulating root and shoot growth via Pin3 1044 1099 IPR013591 -
Trre1g05282 1123 SUPERFAMILY PH domain-like 13 123 - -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 785 815 - -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Trre1g05282 1123 Pfam Transcription factor BRX N-terminal domain 875 910 IPR027988 -
Trre1g05282 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Trre1g05282 1123 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 1015 1029 - -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 519 567 IPR000408 -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Trre1g05282 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 147 203 - -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 980 1037 - -
Trre1g05282 1123 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre1g05282 1123 CDD PH_PLC_plant-like 12 124 - -
Trre1g05282 1123 SUPERFAMILY FYVE/PHD zinc finger 624 698 IPR011011 -
Trre1g05282 1123 Coils Coil 880 900 - -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Trre1g05282 1123 CDD FYVE_like_SF 633 686 - -
Trre1g05282 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Trre1g05282 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Trre1g05282 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 782 815 - -
Trre1g05282 1123 FunFam Putative E3 ubiquitin-protein ligase HERC1 630 698 - -
Trre1g05282 1123 MobiDBLite consensus disorder prediction 924 946 - -
Trre1g05282 1123 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 457 - -
Trre1g05282 1123 Gene3D - 181 360 IPR009091 -
Trre1g05282 1123 Gene3D - 361 459 IPR009091 -
Trre1g05282 1123 SMART fyve_4 622 691 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05282 Trre-Chr1 58820947 58828865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05282 1046 1117 Major Intrinsic Protein MIP AT1G31880 44.444 3.59e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05282 - - gmx:100783270 1862.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00978 11 8779194 8786081 Trre1g05282 1 58820947 58828865 PCT