Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g05277 | ATGGATTTACTTGAAGGCGTCGGAGAGAGTTCATCGCCACCGCGTTCATTCGGCGGTTATAGCAACTACGATATAAGGACCGATGTTTATAACCGTTTGGTTGAAACCGGTCACGATCAAGCCGTATCAAATCCAGATTTCCGTGAACAGATTGAAGCTCATTTCAATCGTTTGCCTCCAAGTTATGGATTTGATGTTAATGTTGATAGAGCTGAAGATGTTTTACTTCATAGAAGTCTTCTTGATTTGGCAAGAGATCCGGATAAGCGTCCCGTTTACCATATTCGCCTCTTAGAGAATATTTCTACTAGGACGGATGGTGAAGATCAACAAATTGGAAGTTCGCACACTAGCCCCGAAGCCGAGACATCTTCTCATGCAGCCAATGGGGGAGGCATAGCATCTCTTAAGAGGACAAGAGATCTGGCAATTGAGTTTGAATCTTGCTCGAAGCTGGAGGACCTAAATTTGGATGTTATAAAGAACTCCAAAGAGACACAGGAAAAACTTGTAACAGACAGCTTTTCTCAGAGGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCCGCTGTTGACAAACCAAAGCTTTTAAGTCAGCTGTCCGCTTTGCTGTCTGATATTGGGCTTAACATCCGGGAAGCACATGTATTTTCCACAACTGATGGCTACTCCCTCGATGTTTTTGTGGTAGATGGATGGCCACTAGAGGAAACCGATGGTTTGTATGCTGCTATGGAAAAAGCTGTAGCAAGGAGTGAGGGGTCATGGTCTCATTCTTCAAATTCTCATTCAGCTGTGGCAAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGACTGGGAAATAGACAGGAGATCGTTAAAGATAGGAGAAAAAATAGCATCTGGATCCTGTGGAGATTTGTATCATGGAGTTTATCTTGGTGAAGATGTTGCTGTTAAGGTTCTGAAATCCGACCAACTGAATGATGCCTTAGGGGATGAGTTTACTCAAGAAGTAGCAATTTTAAGACAGGTGCGTCATAAAAATGTTGTTCGTTTCATTGGTGCATGCACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGACTGGGGGAAGTCTATATGATTACTTGCACAAAAATCGTAATGTCTTGGAGCTGTCTCAATTACTCAAGTTTGCAATTGATGTCTGCAAGGGAATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACAGCTAATTTGCTGATGGATGCACACAATGTTGTTAAAGTGGCTGATTTTGGAGTTGCCCGGTTCCTAATTCAGGGGGGAGTGATGACTGCAGAAACTGGAACGTATAGATGGATGGCACCAGAGGTCATAAACCACCAGCCTTATGATCAGAAGGCAGATGTGTTCAGCTTTTCCATAGTACTTTGGGAACTAGTGACAGCAAAGGTACCATATGATACCATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGACTGCGACCAGAACTGCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCTGTTCCAAGCAGTCGTCCATCCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTGCTTGAAGTGGAGAATAGTTCAGAAACTAATGGCGCTTAA | 1662 | 0.4266 | MDLLEGVGESSSPPRSFGGYSNYDIRTDVYNRLVETGHDQAVSNPDFREQIEAHFNRLPPSYGFDVNVDRAEDVLLHRSLLDLARDPDKRPVYHIRLLENISTRTDGEDQQIGSSHTSPEAETSSHAANGGGIASLKRTRDLAIEFESCSKLEDLNLDVIKNSKETQEKLVTDSFSQRHEHSSVPVHEIIFSAVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLEETDGLYAAMEKAVARSEGSWSHSSNSHSAVAKALAAEGKSGDWEIDRRSLKIGEKIASGSCGDLYHGVYLGEDVAVKVLKSDQLNDALGDEFTQEVAILRQVRHKNVVRFIGACTKCPHLCIVTEYMTGGSLYDYLHKNRNVLELSQLLKFAIDVCKGMEYLHGNNIIHRDLKTANLLMDAHNVVKVADFGVARFLIQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEAVPSSRPSFNEIRVELENLLLEVENSSETNGA | 553 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g05277 | 553 | Gene3D | Transferase(Phosphotransferase) domain 1 | 368 | 552 | - | - | |
| Trre1g05277 | 553 | ProSiteProfiles | ACT domain profile. | 188 | 260 | IPR002912 | - | |
| Trre1g05277 | 553 | Pfam | ACT domain | 187 | 234 | IPR002912 | - | |
| Trre1g05277 | 553 | CDD | STKc_MAP3K-like | 295 | 533 | - | - | |
| Trre1g05277 | 553 | Gene3D | Phosphorylase Kinase; domain 1 | 278 | 367 | - | - | |
| Trre1g05277 | 553 | Coils | Coil | 530 | 550 | - | - | |
| Trre1g05277 | 553 | SUPERFAMILY | ACT-like | 187 | 255 | IPR045865 | - | |
| Trre1g05277 | 553 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 406 | 418 | IPR008271 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | PRINTS | Tyrosine kinase catalytic domain signature | 446 | 456 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | PRINTS | Tyrosine kinase catalytic domain signature | 465 | 487 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | PRINTS | Tyrosine kinase catalytic domain signature | 508 | 530 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | PRINTS | Tyrosine kinase catalytic domain signature | 400 | 418 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | PRINTS | Tyrosine kinase catalytic domain signature | 363 | 376 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 542 | IPR011009 | - | |
| Trre1g05277 | 553 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 138 | 545 | - | - | |
| Trre1g05277 | 553 | FunFam | Serine/threonine-protein kinase isoform 1 | 279 | 367 | - | - | |
| Trre1g05277 | 553 | MobiDBLite | consensus disorder prediction | 105 | 132 | - | - | |
| Trre1g05277 | 553 | ProSiteProfiles | Protein kinase domain profile. | 289 | 542 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre1g05277 | 553 | Pfam | Protein tyrosine and serine/threonine kinase | 289 | 536 | IPR001245 | GO:0004672|GO:0006468 | |
| Trre1g05277 | 553 | MobiDBLite | consensus disorder prediction | 105 | 130 | - | - | |
| Trre1g05277 | 553 | SMART | serkin_6 | 289 | 541 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g05277 | Trre-Chr1 | 58715912 | 58728330 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g05277 | 24 | 544 | MAP Kinase Kinase Kinase | AT2G17700 | 50.844 | 0.0 | 523 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | TKL-Pl-4 | Trre1g05277 | PK_Tyr_Ser-Thr | 1.1e-72 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g05277 | - | - | gmx:100797987 | 920.228 |