Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05274 ATGGAGACTCTAGAAGGAAACAACATTACTATGATTCATGATGCCAAGGTTTTAAAAGATGAAGTGAGACATGAAAATATTCATGACCAAAACAATATAATTAGTCTTACAAACCTTGCTATCACGCAATGCATTGGCAAAACAAATACCAATTTGGATGCAATAATTACTCGTTATGCTGATACTATAATTGATTACAATATGCGCAACTTAGGTTATCCCACAAATCAAAACTTCAATTATAATGTGTTAGCACCCTTGCTTAAATTTCATTTGAACAATGCTGGAGATCCATTTTTTGGAAGCAGTTTCTCTCTAAATTCAATGGCATTTGAAGTTAATGTGCTTGATTGGTTCGCTAAACTATGGGAGATAGAGAAGAATGATTATTGGGGATACGTCACAACTGGTGGAACTGAAGGCAATCTTCATGGAATTCTAGTGGGGAGAGAACAATTTCCAGATGGAATTCTATATAGCTCAGAAGATTCACATTATTCAATATTCAAAATAGCAAGAATGTATCGAATGCAATGTGTGAAGGTTGACTCTTTAATCACTGGTGAAATTGATTGTGTTGAACTAGAGGCTTCTCTACTTGCCAACAAGGATAAACCGGCCATCATCAATATAAACATAGGGACAACTTTGAAAGGAGGTATTGATGATATTGATCTCGTAATACAAATACTTTACAAATGTGGTTTTACTCGTGATCGTTTCTATATTCATTGTGACAGTGCTCTATTTGGAATCATGTTGCCTTTTATCAAACAAGCTCCACGGATTAGCTTCAAGAAACCTATCGATAGTATAACTATTTCAGGTCATAAGTTTTTGGGATGTCCTTCGCCTTGCGGTGTTATAATAACTCGTTTGAAATACATCGATGCACTATCTAGAGATGTTGAATACATTGCTTCAAGGGATGCAACAATCACGGGTAGCCGTAGCGGACATGCACCAATATTTCTTTGGTATGCTCTCACAAAAAGGGGTTTAATAGGACTTGAAAATGAAGTTCAGAATTGCTTATTGAAATCACGTTACTTACTAAATAAACTACGTGATGCTGGAATTGGTGCAATGTTAAACGAATTTAGCAACATAGTTGTTTTTGAGAGACCCCTAGATGATCATTTTACTCATAGATGGAATTTGGCAAGCAATAAAAATATTGCACATGTGGTAGTATTGCAGCATGTTACCATTGAAATGCTTGACACCTTTGTTAGTGAATTTGTCCAAAAACGATTGATTTGGTCAAAAGATGGACAACGGTTTCAACCTCTATGCATTGCAAATGATGTTGGTTCCAGAAATTGTGCTTGTTCGATGCATAATGTATCGAGAAATATTTATTAG 1365 0.3546 METLEGNNITMIHDAKVLKDEVRHENIHDQNNIISLTNLAITQCIGKTNTNLDAIITRYADTIIDYNMRNLGYPTNQNFNYNVLAPLLKFHLNNAGDPFFGSSFSLNSMAFEVNVLDWFAKLWEIEKNDYWGYVTTGGTEGNLHGILVGREQFPDGILYSSEDSHYSIFKIARMYRMQCVKVDSLITGEIDCVELEASLLANKDKPAIININIGTTLKGGIDDIDLVIQILYKCGFTRDRFYIHCDSALFGIMLPFIKQAPRISFKKPIDSITISGHKFLGCPSPCGVIITRLKYIDALSRDVEYIASRDATITGSRSGHAPIFLWYALTKRGLIGLENEVQNCLLKSRYLLNKLRDAGIGAMLNEFSNIVVFERPLDDHFTHRWNLASNKNIAHVVVLQHVTIEMLDTFVSEFVQKRLIWSKDGQRFQPLCIANDVGSRNCACSMHNVSRNIY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05274 454 PANTHER - 19 448 - -
Trre1g05274 454 Pfam Pyridoxal-dependent decarboxylase conserved domain 103 360 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre1g05274 454 Gene3D - 88 329 IPR015421 GO:0003824
Trre1g05274 454 Gene3D Aspartate Aminotransferase, domain 1 330 418 IPR015422 GO:0003824
Trre1g05274 454 SUPERFAMILY PLP-dependent transferases 51 416 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05274 Trre-Chr1 58672049 58674813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05274 213 359 Calmodulin-binding Proteins AT3G17760 26.282 4.44e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05274 K25193 - gmx:100781665 659.448