Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05273 ATGGAGACTCTAGAAGGAAACAACATTACTATGATTCATGATGCCAAGGTTTTAAAAGAAGAAGTGAGATATGAAAATATTCATGACCAAAACAATATCATTAGTCTTACAAACCTTGCTATCACGCAATGCATCGGCGAAACAAATACCAATTTGGATGCAATAATTACTCGTTATGCTGATACTATAATTAATTACAATATGCGCAACTTAGGTTATCCCACAAATCAAAACTTCAATTATAGCGCGTTAGCACCATTGCTTAATTTTCATTTGAACAATGCTGGAGATCCATTTCATGGAAGCAGTTTCTCTCTAAATTCAATGACATTTGAAGTTAGTGTGCTTGATTGGTTTGCTAAACTATGGGAGATAGAGAAGAATGATTATTGGGGATACGTCACAACTGGTGGAACTGAAGGCAATCTTCATGGAATTTTAGTAGGGAGAGAACAATTTCCAGATGGAATTCTATATACCTCACAAGATTCACATTATTCAATATCCAAAATAGCAAGAATGTATCGAATGCAATGTGTTAAGGTTGGCTCTTTGATCTCCGGTGAAATTGATTATGTTGAATTGGAGGCTTCTCTACTTGCCAACAAGGACAAACCAGCCATCATCAATTTAAACATAGGGACAACTTTGAAAGGAGCTATTGATGATATTGATCTTGTAATACAAACACTTTACAAATGTGGTTTTACTCGTGATCGATTCTACATTCATTGCGACAGTGCTCTATTTGGAATCATGTTGCCTTTTATCGAACAAGCTCCAAGGATTAGCTTCAAGAAACCTATCGACAGTGTAACTATTTCAGGTCATAAGTTTTTGGGATGTCCTTCGCCTTGCGGTGTTATAATAACTCGTTTGAAATATATCGATGCACTATCTAGAGATGTTGAAATCATTGCTTCAAGGGATGCAACAATCACGGGTAGCCGTAGCGGACATGCACCAATATTTCTTTGGTATGCTCTCACAAAAAGGGGTTTAATAGGACTTGAAAATGAAGTTCAGAATTGCTTATTGAAATCACGTTACTTACTAAATAAACTACGTGATGCTGGAATTGGTGCAATGTTAAACGAATTTAGCAACATAGTTGTTTTTGAGAGACCCCTAGATGATCATTTTACTCATAGATGGAATTTGGCAAGCAACAAAAATATTGCACATGTGGTAGTATTGCAGCATGTTACCATTGAAATGCTTGACACCTTTGTTAGTGAATTTGTCCAAAAACGATTGATTTGGTCAAAAGATGGACAACGGTTTCAACCTCTATGCATTGCAAATGATGTTGGTTCCAGAAATTGTGCTTGTTCGATGCATAATGTATCGAGAAATATTTATTAG 1365 0.3597 METLEGNNITMIHDAKVLKEEVRYENIHDQNNIISLTNLAITQCIGETNTNLDAIITRYADTIINYNMRNLGYPTNQNFNYSALAPLLNFHLNNAGDPFHGSSFSLNSMTFEVSVLDWFAKLWEIEKNDYWGYVTTGGTEGNLHGILVGREQFPDGILYTSQDSHYSISKIARMYRMQCVKVGSLISGEIDYVELEASLLANKDKPAIINLNIGTTLKGAIDDIDLVIQTLYKCGFTRDRFYIHCDSALFGIMLPFIEQAPRISFKKPIDSVTISGHKFLGCPSPCGVIITRLKYIDALSRDVEIIASRDATITGSRSGHAPIFLWYALTKRGLIGLENEVQNCLLKSRYLLNKLRDAGIGAMLNEFSNIVVFERPLDDHFTHRWNLASNKNIAHVVVLQHVTIEMLDTFVSEFVQKRLIWSKDGQRFQPLCIANDVGSRNCACSMHNVSRNIY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05273 454 Gene3D - 88 329 IPR015421 GO:0003824
Trre1g05273 454 PANTHER - 25 448 - -
Trre1g05273 454 SUPERFAMILY PLP-dependent transferases 48 416 IPR015424 -
Trre1g05273 454 Gene3D Aspartate Aminotransferase, domain 1 330 418 IPR015422 GO:0003824
Trre1g05273 454 Pfam Pyridoxal-dependent decarboxylase conserved domain 110 360 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05273 Trre-Chr1 58656999 58659276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05273 213 383 Calmodulin-binding Proteins AT1G65960 23.889 2.89e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05273 K25193 - gmx:100781665 657.521